[rdf4j-dev] Build failed in Jenkins: rdf4j-develop-deploy #157

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[rdf4j-dev] Build failed in Jenkins: rdf4j-develop-deploy #157
From: ci-admin@xxxxxxxxxxx
Date: Sun, 26 Jul 2020 15:28:11 -0400 (EDT)
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See <https://ci.eclipse.org/rdf4j/job/rdf4j-develop-deploy/157/display/redirect?page=changes>

Changes:

[jeen broekstra] initial commit

[jeen broekstra] licenses + initial sources for programming docs

[jeen broekstra] simplified organization

[jeen broekstra] removed hard linebreaks

[jeen broekstra] added html output dir to gitignore

[jeen broekstra] added simple build script

[jeen broekstra] Fixed ignore

[jeen broekstra] added last three chapters

[jeen broekstra] Added last chapters

[jeen broekstra] added migration guide

[jeen broekstra] added migration guide and server/console/workbench

[jeen broekstra] Experimenting with css and different org

[jeen broekstra] Jekyll setup

[jeen broekstra] fixed site title, description, e-mail

[jeen broekstra] removed default empty index file

[jeen broekstra] Fixed css incusion

[jeen broekstra] set up full site with header using plain asciidoc

[jeen broekstra] Revert "removed default empty index file"

[jeen broekstra] Revert "fixed site title, description, e-mail"

[jeen broekstra] Revert "Jekyll setup"

[jeen broekstra] set toc to right

[jeen broekstra] fixed section numbering

[jeen broekstra] added tutorial

[jeen broekstra] added tutorial properly this time

[jeen broekstra] tweaked header looks

[jeen broekstra] added docinfo for dynamic table of contents

[jeen broekstra] fixed font style in dynamic toc

[jeen broekstra] fixed toc sizes

[jeen broekstra] moved javadoc to docs.rdf4j.org

[jeen broekstra] added section on ModelBuilder API

[jeen broekstra] added REST API and binary RDF docs

[jeen broekstra] fixed section levels

[jeen broekstra] added new limit/offset/distinct params

[jeen broekstra] javadoc links tweaked

[jeen broekstra] fixed links

[jeen broekstra] improved formatting, added javadoc links

[jeen broekstra] fixed typo

[jeen broekstra] fixed cross-reference

[jeen broekstra] fixed links and formatting

[jeen broekstra] minor typo

[jeen broekstra] added license notice

[jeen broekstra] typo

[jeen broekstra] added docinfo for dynamic toc

[jeen broekstra] First draft of SAIL API documentation

[jeen broekstra] included new docinfo

[jeen broekstra] more info on NotifyingSail

[jeen broekstra] StackableSail

[github] Fix 'RDF$J' typo in Maven section

[github] Create CONTRIBUTING.md

[github] Update README.adoc

[github] Update README.adoc

[github] Update README.adoc

[github] Update README.adoc

[github] Fix typo "example on hot" to "examples on how"

[github] Fix typo {javdoc} to {javadoc}

[github] Update README.adoc

[github] Update README.adoc

[github] Update CONTRIBUTING.md

[jeen broekstra] Adding code examples and first draft of new rdf tutorial

[jeen broekstra] adding info about blank nodes

[jeen broekstra] More examples

[jeen broekstra] yet more examples and cleanup

[jeen broekstra] Finished first complete version

[jeen broekstra] fixed links to github example code

[jeen broekstra] added link to new RDF tutorial

[jeen broekstra] Added explanation of datatypes and language tags

[jeen broekstra] minor typo

[bart hanssens] Fixed try-catch code

[bart hanssens] Fixed link to ModelBuilder html page

[jeen broekstra] Added line numbers, improved txn handling examples

[jeen broekstra] fix mistake in code example

[jeen broekstra] Import cleanup

[bart hanssens] Corrected typo

[bart hanssens] Corrected typo

[bart hanssens] Added Lucene Sail example

[bart hanssens] Added whitespace to connect blocks

[bart hanssens] Added asciiDoc markup

[bart hanssens] Corrected asciiDoc markup

[bart hanssens] Minor comments

[bart hanssens] Slightly more compact

[jeen broekstra] Added tutorial for creating sparql custom functions

[jeen broekstra] added link to custom sparql function tutorial

[jeen broekstra] Added project workflow / project lead doc

[jeen broekstra] added further reading links

[bart hanssens] Initial work on geosparql doc

[bart hanssens] Additional geosparql documentation

[bart hanssens] Minor layout fixes

[jeen broekstra] Added some pointers about Models class

[bart hanssens] Added info on spatial4j, jts

[bart hanssens] Additional clarification

[bart hanssens] Minor correction

[bart hanssens] Added Solr example

[mikel.egana.aranguren] Fixed typo in code at http://docs.rdf4j.org/programming/#_evaluating_a_graph_query

[bart hanssens] Added JSON-LD mimetype

[james.leigh] Fix #25: Add JSON-LD mimetype

[james.leigh] Fix #20: Add example for background parsing

[james.leigh] Fix #29: Document use of develop branch

[james.leigh] Issue #29: Clarify patch request steps

[james.leigh] Issues/#29: Clarify feature branches

[james.leigh] Issues/#29: Use PR milestones to schedule merge

[james.leigh] Issue #29: Discuss issues branches before features branches

[james.leigh] Fix #31: List download page as announcement

[james.leigh] Fix #33: Describe all five github projects

[github] Typos

[github] More Typos

[bart hanssens] Added hyperlinks

[bart hanssens] Fix rendering of table1

[anqit.praqash] Create documentation for Spanqit

[james.leigh] Fix #45: Merge develop into master before minor review

[bart hanssens] Initial SHACL documentation

[james.leigh] Fix #50: Update docs to include javadoc instructions and jenkins

[bart hanssens] Small corrections in console doc

[bart hanssens] Updated console docs

[jeen broekstra] jenkins deployment now uses automatic followup jobs

[jeen broekstra] added clarifying note about use of foaf property

[jeen broekstra] GH-56 renamed to sparqlbuilder and integrated in main doco

[jeen broekstra] GH-56 add a cautionary note about this api being experimental

[jeen broekstra] GH-56 fixes from review

[jeen broekstra] updated instructions around server config

[jeen broekstra] improved geosparql documentation

[jeen broekstra] add nod to spatial4j and jts

[jeen broekstra] rio configuration [WIP]

[jeen broekstra] link update for javadoc

[bart hanssens] Fixed typo

[bart hanssens] Fixed typos

[jeen broekstra] document how to configure rio parsers

[jeen broekstra] minor typo

[jeen broekstra] clarified how patch releases are tagged

[jeen broekstra] eclipse/rdf4j#1154 basic hugo site setup using eclipse theme

[bart hanssens] Added documentation on JAXP

[bart hanssens] Correction of links

[bart hanssens] Update property name

[jeen broekstra] eclipse/rdf4j#1154 hugo setup [WIP]

[jeen broekstra] fixed typos and clarified a few things

[bart hanssens] Added documentation about namespaces

[bart hanssens] Added documentation about loading/saving queries

[bart hanssens] Swapped long/lat + correct coordinate

[jeen broekstra] eclipse/rdf4j#1154 more hugo setup [WIP]

[jeen broekstra] GH-1200 documentation for new way to config rio

[jeen broekstra] minor editorial

[håvard ottestad] expanded SHACL documentation

[jeen broekstra] added note to indicate new feature in 2.5

[jeen broekstra] added std note to indicate new feature in 2.5

[jeen broekstra] added std note to indicate new feature in 2.5

[jeen broekstra] added std note to indicate new feature in 2.5

[jeen broekstra] marked the wrong section :S

[jeen broekstra] documented mixed use of RDF4J Model objects and SparqlBuilder's own interfaces

[bart hanssens] Added documentation on jdk bug

[bart hanssens] Fix link

[bart hanssens] Added paragraph on ValidatingValueFactory

[bart hanssens] Added link to javadoc

[jeen broekstra] replaced old inferencer with new in docs

[håvard ottestad] updated shacl documentation

[bart hanssens] Added info on building/pushing docker

[jeen broekstra] eclipse/rdf4j#1154 reset on basic setup

[jeen broekstra] eclipse/rdf4j#1154 started porting documentation

[jeen broekstra] further update work [WIP]

[jeen broekstra] trying to get rid of submodule [WIP]

[jeen broekstra] re-added theme as normal content

[jeen broekstra] ported maven/eclipse tutorial

[jeen broekstra] ported custom function howto

[håvard ottestad] docs for https://github.com/eclipse/rdf4j/issues/1374

[håvard ottestad] https://github.com/eclipse/rdf4j/issues/1290 updating shacl shapes and also validating large datasets

[jeen broekstra] migrating all programming docs

[jeen broekstra] migrated rest api doco

[jeen broekstra] migrated more doco

[jeen broekstra] migrated more doco, added javadoc

[håvard ottestad] https://github.com/eclipse/rdf4j/issues/1357 docs for SHACL in server/workbench

[jeen broekstra] added news, fixed logo

[jeen broekstra] added ugly under construction warning

[jeen broekstra] layout fixes and added related projects

[jeen broekstra] set correct base url

[jeen broekstra] clean up footer, jumbotron pops

[jeen broekstra] fix programming subpage

[jeen broekstra] direct link to contributor guidelines

[jeen broekstra] fix link to issue tracker

[jeen broekstra] update news

[jeen broekstra] download link added to main menu

[jeen broekstra] added setup doco

[jeen broekstra] removed under construction

[jeen broekstra] removed old content

[jeen broekstra] fix links in readme

[bart hanssens] Removed superfluous evaluate

[bart hanssens] Indentation in while-block

[jeen broekstra] added full copy of 2.5.0 javadoc as 'latest'

[jeen broekstra] correct link domain, use <code> tag

[jeen broekstra] adding javadoc links

[jeen broekstra] eclipse/rdf4j#1428 adding more javadoc links [WIP]

[jeen broekstra] eclipse/rdf4j#1428 javadoc links

[jeen broekstra] eclipse/rdf4j#1400 clarified install and added links

[jeen broekstra] eclipse/rdf4j#1434 added doco for optional dataset params

[bart hanssens] Added example on shacl validation

[jeen broekstra] eclipse/rdf4j#1389 documentation for repo creation

[jeen broekstra] news, download, and javadoc for 3.0.0-M1

[jeen broekstra] fixed release notes link

[full17] modified invalid link by typing error in getting-started

[jeen broekstra] release 2.5.3

[github] Create rdf4j-300m2.md

[håvard ottestad] Updated downloads page with m2

[jeen broekstra] added release notes page

[jeen broekstra] minor typo

[jeen broekstra] eclipse/rdf4j#1451 re-incorporated basic auth setup docs

[jeen broekstra] release 2.5.4

[github] Update _index.md

[github] Corrected links in Getting started

[github] Layout corrections

[jeen broekstra] release 3.0.0, javadoc, and a layout change

[jeen broekstra] public dir should not be checked in

[jeen broekstra] hugo build dir added to gitignore

[github] Corrected typo in setting

[jeen broekstra] manual adding of geosparql for server support no longer necessary

[github] Corrected Servlet/JSP version

[bart hanssens] Split into server-workbench and console

[bart hanssens] Removed empty bullet

[jeen broekstra] documented update to repository configuration operations

[bart hanssens] Use img and add class

[bart hanssens] Corrected title

[bart hanssens] Corrected links and removed old tomcat versions

[bart hanssens] Use init instead of initialize

[bart hanssens] Removed duplicate link

[jeen broekstra] release 3.0.1

[jeen broekstra] release 2.5.5

[jeen broekstra] clarification

[github] news item about FedX joining RDF4J (#116)

[aschwarte10] #1555: Documentation of Federation with FedX

[github] 3.0.2 release

[github] 3.0.2 release

[github] 3.0.2 release

[github] deprecate spin (#119)

[github] removed incubation logo from sidebar, small news item (#120)

[github] Releases/3.0.3 (#121)

[github] Bump mixin-deep from 1.3.1 to 1.3.2 in /site/themes/hugo-solstice-theme

[github] Bump js-yaml from 3.12.2 to 3.13.1 in /site/themes/hugo-solstice-theme

[github] Bump lodash from 4.17.11 to 4.17.15 in /site/themes/hugo-solstice-theme

[github] Bump jquery from 3.3.1 to 3.4.1 in /site/themes/hugo-solstice-theme

[github] Bump fstream from 1.0.11 to 1.0.12 in /site/themes/hugo-solstice-theme

[jeen broekstra] fixed 3.0.3 javadoc

[github] https://github.com/eclipse/rdf4j/issues/1662 ElasticsearchStore docs (#127)

[jeen broekstra] announcement + links for 3.1 milestone 1

[jeen broekstra] clarified protocol versions

[aschwarte10] #1555: Refine documentation for FedX integration

[jeen broekstra] cleaned up workflow/release mgmt docs

[github] Update index.md

[github] Update _index.md

[github] Create rdf4j-304.md

[håvard ottestad] javadocs 3.0.4

[jeen broekstra] News item and download links for milestone 2

[jeen broekstra] GH-1747 added code examples for use of results as Iterable

[jeen broekstra] GH-1555: FedX documentation improvements w.r.t workbench usage

[jeen broekstra] updated about page

[jeen broekstra] added architecture diagram

[jeen broekstra] added FedX as SAIL extension component

[jeen.broekstra] eclipse/rdf4j#1875 extended docs on jaxp and xerces

[jeen.broekstra] updated docs

[jeen.broekstra] modified spacing

[jeen.broekstra] eclipse/rdf4j#1897 release notes for 3.1.0

[jeen.broekstra] eclipse/rdf4j#1897 news item and download links

[jeen.broekstra] back to hugo-specific code highlighting for now

[jeen.broekstra] Javadoc for release 3.1.0

[jeen broekstra] eclipse/rdf4j#1909 release docs update to use Jenkins for SDK

[jeen.broekstra] release 3.1.1

[github] Fix typos (#143)

[jeen broekstra] release 3.1.2

[github] milestone build 3.2.0 M1 (#147)

[github] eclipse/rdf4j#2032 basic documentation for RDF* (#146)

[github] eclipse/rdf4j#2011 added merge strategy steps and motivation (#145)

[jeen broekstra] release 3.1.3

[github] release 3.1.4 and 3.2 milestone build 2 (#149)

[bart hanssens] GH-1517 Added paragraph on console history

[github] eclipse/rdf4j#2101 document use of writable property (#148)

[håvard ottestad] GH-2044 explain query docs

[håvard ottestad] typos and other fixes

[github] GH-2032 added sections about conversion and SPARQL* (#154)

[github] GH-2044 add docs for "new scope" (#156)

[github] eclipse/rdf4j#2175 added paragraph about thread pool size (#157)

[jeen broekstra] minor fix to rendering of table in query explain section

[jeen broekstra] news item and release notes for RDF4J 3.2.0

[jeen broekstra] javadoc and download links

[jeen broekstra] upgrade notes for SAIL implementors

[jeen broekstra] fix section header version number

[github] eclipse/rdf4j#2201 eclipse/rdf4j#1902 Theme import and update to newer hugo, content reorg (#158)

[github] fixed typo in sparql query

[bart hanssens] GH-2222 added link to 3.0 API

[bart hanssens] GH-2223 fix links

[jeen broekstra] eclipse/rdf4j#2235 first draft of release notes for 3.3.0

[github] modified about page conform Eclipse guidelines (#162)

[github] eclipse/rdf4j#2249 update for release 3.2.1 (#163)

[håvard ottestad] sh:inversePath support

[github] eclipse/rdf4j#2274 fix css layout so links are clickable on mobile (#164)

[bart hanssens] GH-2235 added note on jackson dependencies

[bart hanssens] GH-2235 added names

[github] GH-2234 docs for sh:inversePath (#165)

[bart hanssens] GH-2235 added more names

[jeen broekstra] added signoff flag to squashing method to show how to fix signoff issues

[bart hanssens] GH-2235 correction in name

[jeen broekstra] correct site title and base url

[jeen broekstra] eclipse/rdf4j#2235 added pavel to acknowledgments

[github] eclipse/rdf4j#2274 simpler design for docs page (#167)

[github] GH-2269 inital notes + added names (#166)

[github] eclipse/rdf4j#2144 blog article on performance (#168)

[github] eclipse/rdf4j#2318 fix images and code formatting + few minor updates (#169)

[github] initial release documents for 3.3.0-m1 (#170)

[håvard ottestad] fixes https://github.com/eclipse/rdf4j/issues/2335

[github] eclipse/rdf4j#2321 release notes, download, and news item for 3.2.3 (#171)

[github] GH-2326 show toc instead of about in right column (#172)

[github] Gitter news item and link on support page (#175)

[håvard ottestad] 3.3.0-M2 release notes

[håvard ottestad] updated release notes

[jeen broekstra] GH-2235 added ack for elad shaked

[jeen broekstra] eclipse/rdf4j#2235 added a few highlight bullet points

[github] Updated SHACL documentation (#174)

[håvard ottestad] more updates for release

[håvard ottestad] updated java docs

[håvard ottestad] more 3.3.0 release notes, a news article and also more shacl documentation

[håvard ottestad] tab typo fix

[håvard ottestad] fixed typo

[håvard ottestad] fixed incorrect link

[håvard ottestad] added a link to the rsx spec

[håvard ottestad] fixed TODO that I had overseen

[github] eclipse/rdf4j#405 minimal documentation for RDF container utility (#178)

[jeen broekstra] GH-2333 remove eclipse ui prefs from version control

[jeen broekstra] GH-2333 fix formatting of pom file

[github] GH-2333 readme file specifically for website editing (#2394)


------------------------------------------
Started by timer
Running as SYSTEM
Agent basic-j2d3d is provisioned from template basic
---
apiVersion: "v1"
kind: "Pod"
metadata:
  annotations: {}
  labels:
    jenkins: "slave"
    jenkins/label: ""
  name: "basic-j2d3d"
spec:
  containers:
  - env:
    - name: "JENKINS_SECRET"
      value: "********"
    - name: "JENKINS_TUNNEL"
      value: "jenkins-discovery.rdf4j.svc.cluster.local:50000"
    - name: "JENKINS_AGENT_NAME"
      value: "basic-j2d3d"
    - name: "JENKINS_REMOTING_JAVA_OPTS"
      value: "-showversion -XshowSettings:vm -Xmx256m -Dsun.zip.disableMemoryMapping=true\
        \ -Dorg.jenkinsci.remoting.engine.JnlpProtocol3.disabled=true -Dorg.jenkinsci.plugins.gitclient.CliGitAPIImpl.useSETSID=true"
    - name: "JAVA_TOOL_OPTIONS"
      value: ""
    - name: "_JAVA_OPTIONS"
      value: ""
    - name: "OPENJ9_JAVA_OPTIONS"
      value: "-XX:+IgnoreUnrecognizedVMOptions -XX:+IdleTuningCompactOnIdle -XX:+IdleTuningGcOnIdle"
    - name: "JENKINS_NAME"
      value: "basic-j2d3d"
    - name: "JENKINS_AGENT_WORKDIR"
      value: "/home/jenkins/agent"
    - name: "JENKINS_URL"
      value: "http://jenkins-ui.rdf4j.svc.cluster.local/rdf4j/";
    image: "docker.io/eclipsecbi/jiro-agent-basic:remoting-4.2.1"
    imagePullPolicy: "Always"
    name: "jnlp"
    resources:
      limits:
        memory: "4096Mi"
        cpu: "2000m"
      requests:
        memory: "4096Mi"
        cpu: "1000m"
    securityContext:
      privileged: false
    tty: true
    volumeMounts:
    - mountPath: "/home/jenkins/.m2/toolchains.xml"
      name: "m2-dir"
      readOnly: true
      subPath: "toolchains.xml"
    - mountPath: "/home/jenkins/.mavenrc"
      name: "m2-dir"
      readOnly: true
      subPath: ".mavenrc"
    - mountPath: "/opt/tools"
      name: "volume-0"
      readOnly: false
    - mountPath: "/home/jenkins"
      name: "volume-2"
      readOnly: false
    - mountPath: "/home/jenkins/.m2/repository"
      name: "volume-3"
      readOnly: false
    - mountPath: "/home/jenkins/.m2/settings-security.xml"
      name: "m2-secret-dir"
      readOnly: true
      subPath: "settings-security.xml"
    - mountPath: "/home/jenkins/.m2/wrapper"
      name: "volume-4"
      readOnly: false
    - mountPath: "/home/jenkins/.m2/settings.xml"
      name: "m2-secret-dir"
      readOnly: true
      subPath: "settings.xml"
    - mountPath: "/home/jenkins/.ssh"
      name: "volume-1"
      readOnly: false
    - mountPath: "/home/jenkins/agent"
      name: "workspace-volume"
      readOnly: false
    workingDir: "/home/jenkins/agent"
  nodeSelector:
    beta.kubernetes.io/os: "linux"
  restartPolicy: "Never"
  securityContext: {}
  volumes:
  - name: "volume-0"
    persistentVolumeClaim:
      claimName: "tools-claim-jiro-rdf4j"
      readOnly: true
  - name: "m2-secret-dir"
    secret:
      secretName: "m2-secret-dir"
  - emptyDir:
      medium: ""
    name: "volume-2"
  - configMap:
      name: "m2-dir"
    name: "m2-dir"
  - configMap:
      name: "known-hosts"
    name: "volume-1"
  - emptyDir:
      medium: ""
    name: "workspace-volume"
  - emptyDir:
      medium: ""
    name: "volume-4"
  - emptyDir:
      medium: ""
    name: "volume-3"

Building remotely on basic-j2d3d in workspace <https://ci.eclipse.org/rdf4j/job/rdf4j-develop-deploy/ws/>
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
No credentials specified
Cloning the remote Git repository
Cloning repository https://github.com/eclipse/rdf4j.git
 > git init <https://ci.eclipse.org/rdf4j/job/rdf4j-develop-deploy/ws/> # timeout=10
Fetching upstream changes from https://github.com/eclipse/rdf4j.git
 > git --version # timeout=10
 > git fetch --tags --force --progress -- https://github.com/eclipse/rdf4j.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/eclipse/rdf4j.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/eclipse/rdf4j.git # timeout=10
Fetching upstream changes from https://github.com/eclipse/rdf4j.git
 > git fetch --tags --force --progress -- https://github.com/eclipse/rdf4j.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse origin/develop^{commit} # timeout=10
Checking out Revision ea5659a8c1fa3031f902dcef34005cc913a83f35 (origin/develop)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f ea5659a8c1fa3031f902dcef34005cc913a83f35 # timeout=10
Commit message: "Merge pull request #2393 from eclipse/master"
 > git rev-list --no-walk ba21c5287b2cb51951541b79169b4299c1456757 # timeout=10
warning: inexact rename detection was skipped due to too many files.
warning: you may want to set your diff.renameLimit variable to at least 31616 and retry the command.
[rdf4j-develop-deploy] $ /bin/sh -xe /tmp/jenkins2377704103017600370.sh
+ gpg --batch --import ****
gpg: directory '/home/jenkins/.gnupg' created
gpg: keybox '/home/jenkins/.gnupg/pubring.kbx' created
gpg: /home/jenkins/.gnupg/trustdb.gpg: trustdb created
gpg: key 7FAA78B1C3FFDD85: public key "Eclipse RDF4J project <rdf4j-dev@xxxxxxxxxxx>" imported
gpg: can't connect to the agent: IPC connect call failed
gpg: error getting the KEK: No agent running
gpg: error reading ****: No agent running
gpg: import from **** failed: No agent running
gpg: Total number processed: 0
gpg:               imported: 1
gpg:       secret keys read: 1
Build step 'Execute shell' marked build as failure
Follow-Ups:
- [rdf4j-dev] Jenkins build is back to normal : rdf4j-develop-deploy #158
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