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Re: [ice-dev] Fwd: HDF5 Build Issue
Hi everyone,

I am building on my Mac. Here is the error message I am getting:
Thanks!

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running org.eclipse.ice.io.hdf.test.HdfFileFactoryTester
/Users/claire/ICETests/ioData/test1.h5
java.lang.UnsatisfiedLinkError: no jhdf5 in java.library.path
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1886)
at java.lang.Runtime.loadLibrary0(Runtime.java:849)
at java.lang.System.loadLibrary(System.java:1088)
at ncsa.hdf.hdf5lib.H5.loadH5Lib(H5.java:347)
at ncsa.hdf.hdf5lib.H5.<clinit>(H5.java:274)
at ncsa.hdf.hdf5lib.HDF5Constants.<clinit>(HDF5Constants.java:28)
at ncsa.hdf.object.h5.H5File.<init>(H5File.java:99)
at ncsa.hdf.object.h5.H5File.<init>(H5File.java:132)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at java.lang.Class.newInstance(Class.java:374)
at ncsa.hdf.object.FileFormat.<clinit>(FileFormat.java:229)
at org.eclipse.ice.io.hdf.HdfFileFactory.createH5File(HdfFileFactory.java:65)
at org.eclipse.ice.io.hdf.test.HdfFileFactoryTester.checkFileOperations(HdfFileFactoryTester.java:81)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcess(SurefireStarter.java:123)
at org.eclipse.tycho.surefire.osgibooter.OsgiSurefireBooter.run(OsgiSurefireBooter.java:85)
at org.eclipse.tycho.surefire.osgibooter.HeadlessTestApplication.run(HeadlessTestApplication.java:21)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.internal.app.EclipseAppContainer.callMethodWithException(EclipseAppContainer.java:587)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:198)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:354)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:181)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:636)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:591)
at org.eclipse.equinox.launcher.Main.run(Main.java:1450)
at org.eclipse.equinox.launcher.Main.main(Main.java:1426)
java.lang.NullPointerException
at org.eclipse.ice.io.hdf.HdfFileFactory.createH5File(HdfFileFactory.java:73)
at org.eclipse.ice.io.hdf.test.HdfFileFactoryTester.checkFileOperations(HdfFileFactoryTester.java:81)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcess(SurefireStarter.java:123)
at org.eclipse.tycho.surefire.osgibooter.OsgiSurefireBooter.run(OsgiSurefireBooter.java:85)
at org.eclipse.tycho.surefire.osgibooter.HeadlessTestApplication.run(HeadlessTestApplication.java:21)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.internal.app.EclipseAppContainer.callMethodWithException(EclipseAppContainer.java:587)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:198)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:354)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:181)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:636)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:591)
at org.eclipse.equinox.launcher.Main.run(Main.java:1450)
at org.eclipse.equinox.launcher.Main.main(Main.java:1426)
Tests run: 1, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.044 sec <<< FAILURE!
Running org.eclipse.ice.io.hdf.test.HdfIOFactoryTester
Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.001 sec
Running org.eclipse.ice.io.hdf.test.HdfIORegistryTester
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec
Running org.eclipse.ice.io.hdf.test.HdfReaderFactoryTester
java.lang.NullPointerException
at org.eclipse.ice.io.hdf.HdfFileFactory.createH5File(HdfFileFactory.java:73)
at org.eclipse.ice.io.hdf.test.HdfReaderFactoryTester.checkGetters(HdfReaderFactoryTester.java:119)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcess(SurefireStarter.java:123)
at org.eclipse.tycho.surefire.osgibooter.OsgiSurefireBooter.run(OsgiSurefireBooter.java:85)
at org.eclipse.tycho.surefire.osgibooter.HeadlessTestApplication.run(HeadlessTestApplication.java:21)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.internal.app.EclipseAppContainer.callMethodWithException(EclipseAppContainer.java:587)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:198)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:354)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:181)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:636)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:591)
at org.eclipse.equinox.launcher.Main.run(Main.java:1450)
at org.eclipse.equinox.launcher.Main.main(Main.java:1426)
java.lang.NullPointerException
at org.eclipse.ice.io.hdf.HdfFileFactory.createH5File(HdfFileFactory.java:73)
at org.eclipse.ice.io.hdf.test.HdfReaderFactoryTester.checkReaders(HdfReaderFactoryTester.java:292)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcess(SurefireStarter.java:123)
at org.eclipse.tycho.surefire.osgibooter.OsgiSurefireBooter.run(OsgiSurefireBooter.java:85)
at org.eclipse.tycho.surefire.osgibooter.HeadlessTestApplication.run(HeadlessTestApplication.java:21)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.internal.app.EclipseAppContainer.callMethodWithException(EclipseAppContainer.java:587)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:198)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:354)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:181)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:636)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:591)
at org.eclipse.equinox.launcher.Main.run(Main.java:1450)
at org.eclipse.equinox.launcher.Main.main(Main.java:1426)
Tests run: 2, Failures: 2, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec <<< FAILURE!
Running org.eclipse.ice.io.hdf.test.HdfWriterFactoryTester
java.lang.NullPointerException
at org.eclipse.ice.io.hdf.HdfFileFactory.createH5File(HdfFileFactory.java:73)
at org.eclipse.ice.io.hdf.test.HdfWriterFactoryTester.checkCreators(HdfWriterFactoryTester.java:98)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcess(SurefireStarter.java:123)
at org.eclipse.tycho.surefire.osgibooter.OsgiSurefireBooter.run(OsgiSurefireBooter.java:85)
at org.eclipse.tycho.surefire.osgibooter.HeadlessTestApplication.run(HeadlessTestApplication.java:21)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.internal.app.EclipseAppContainer.callMethodWithException(EclipseAppContainer.java:587)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:198)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:354)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:181)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:636)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:591)
at org.eclipse.equinox.launcher.Main.run(Main.java:1450)
at org.eclipse.equinox.launcher.Main.main(Main.java:1426)
java.lang.NullPointerException
at org.eclipse.ice.io.hdf.HdfFileFactory.createH5File(HdfFileFactory.java:73)
at org.eclipse.ice.io.hdf.test.HdfWriterFactoryTester.checkWriters(HdfWriterFactoryTester.java:239)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:175)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcess(SurefireStarter.java:123)
at org.eclipse.tycho.surefire.osgibooter.OsgiSurefireBooter.run(OsgiSurefireBooter.java:85)
at org.eclipse.tycho.surefire.osgibooter.HeadlessTestApplication.run(HeadlessTestApplication.java:21)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.internal.app.EclipseAppContainer.callMethodWithException(EclipseAppContainer.java:587)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:198)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:354)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:181)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:636)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:591)
at org.eclipse.equinox.launcher.Main.run(Main.java:1450)
at org.eclipse.equinox.launcher.Main.main(Main.java:1426)
Tests run: 2, Failures: 1, Errors: 1, Skipped: 0, Time elapsed: 0.005 sec <<< FAILURE!
Running org.eclipse.ice.io.ips.test.IPSReaderTester
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 sec
Running org.eclipse.ice.io.ips.test.IPSWriterTester
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec
Running org.eclipse.ice.io.serializable.test.IOServiceTester
[IOService Message] Adding FakeReader reader to the IOService Mapping.
[IOService Message] Adding FakeWriter writer to the IOService Mapping.
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec

Results :

Failed tests:   checkFileOperations(org.eclipse.ice.io.hdf.test.HdfFileFactoryTester)
  checkGetters(org.eclipse.ice.io.hdf.test.HdfReaderFactoryTester)
  checkReaders(org.eclipse.ice.io.hdf.test.HdfReaderFactoryTester)
  checkCreators(org.eclipse.ice.io.hdf.test.HdfWriterFactoryTester)

Tests in error: 
  checkWriters(org.eclipse.ice.io.hdf.test.HdfWriterFactoryTester)

Tests run: 10, Failures: 4, Errors: 1, Skipped: 1

[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] org.eclipse.ice.build ............................. SUCCESS [  0.196 s]
[INFO] org.eclipse.ice.target.kepler ..................... SUCCESS [  0.077 s]
[INFO] org.eclipse.ice.dependencies ...................... SUCCESS [  0.684 s]
[INFO] org.eclipse.ice.datastructures .................... SUCCESS [  0.104 s]
[INFO] org.eclipse.ice.io ................................ SUCCESS [  0.058 s]
[INFO] org.eclipse.ice.materials ......................... SUCCESS [  0.044 s]
[INFO] org.eclipse.ice.item .............................. SUCCESS [  0.103 s]
[INFO] org.eclipse.ice.core .............................. SUCCESS [  0.054 s]
[INFO] org.eclipse.ice.client ............................ SUCCESS [  0.055 s]
[INFO] org.eclipse.ice.analysistool ...................... SUCCESS [  0.039 s]
[INFO] org.eclipse.ice.client.compatibility .............. SUCCESS [  0.046 s]
[INFO] org.eclipse.ice.reactor.plant ..................... SUCCESS [  0.072 s]
[INFO] org.eclipse.ice.client.widgets.rcp ................ SUCCESS [  0.163 s]
[INFO] org.eclipse.ice.reactor ........................... SUCCESS [  0.061 s]
[INFO] org.eclipse.ice.client.widgets .................... SUCCESS [  0.186 s]
[INFO] org.eclipse.ice.client.test ....................... SUCCESS [  6.673 s]
[INFO] org.eclipse.ice.client.widgets.moose .............. SUCCESS [  0.126 s]
[INFO] org.eclipse.ice.reactor.sfr ....................... SUCCESS [  0.054 s]
[INFO] org.eclipse.ice.reactorAnalyzer ................... SUCCESS [  0.057 s]
[INFO] org.eclipse.ice.client.widgets.reactoreditor ...... SUCCESS [  0.091 s]
[INFO] org.eclipse.ice.client.widgets.reactoreditor.test . SUCCESS [  9.861 s]
[INFO] org.eclipse.ice.client.widgets.reactoreditor.grid . SUCCESS [  0.054 s]
[INFO] org.eclipse.ice.client.widgets.reactoreditor.grid.test  SUCCESS [  0.044 s]
[INFO] org.eclipse.ice.client.widgets.reactoreditor.lwr .. SUCCESS [  0.085 s]
[INFO] org.eclipse.ice.client.widgets.reactoreditor.lwr.test  SUCCESS [  3.890 s]
[INFO] org.eclipse.ice.client.widgets.reactoreditor.sfr .. SUCCESS [  0.070 s]
[INFO] org.eclipse.ice.client.widgets.reactoreditor.sfr.test  SUCCESS [  3.762 s]
[INFO] org.eclipse.ice.client.widgets.test ............... SUCCESS [  0.057 s]
[INFO] org.eclipse.ice.client.widgets.rcp.test ........... SUCCESS [  0.048 s]
[INFO] org.eclipse.ice.client.rcp ........................ SUCCESS [  0.055 s]
[INFO] org.eclipse.ice.datastructures.test ............... SUCCESS [ 27.947 s]
[INFO] org.eclipse.ice.core.test ......................... SUCCESS [  2.652 s]
[INFO] org.eclipse.ice.persistence.xml ................... SUCCESS [  0.034 s]
[INFO] org.eclipse.ice.item.test ......................... SUCCESS [  9.458 s]
[INFO] org.eclipse.ice.caebat ............................ SUCCESS [  0.040 s]
[INFO] org.eclipse.ice.persistence.xml.test .............. SUCCESS [ 20.052 s]
[INFO] org.eclipse.ice.io.test ........................... FAILURE [  1.786 s]
[INFO] org.eclipse.ice.reactor.test ...................... SKIPPED
[INFO] org.eclipse.ice.reactor.sfr.test .................. SKIPPED
[INFO] org.eclipse.ice.reactor.plant.test ................ SKIPPED
[INFO] org.eclipse.ice.reactor.perspective ............... SKIPPED
[INFO] org.eclipse.ice.reactorAnalyzer.test .............. SKIPPED
[INFO] org.eclipse.ice.caebat.test ....................... SKIPPED
[INFO] org.eclipse.ice.kdd ............................... SKIPPED
[INFO] org.eclipse.ice.kdd.test .......................... SKIPPED
[INFO] org.eclipse.ice.proteus ........................... SKIPPED
[INFO] org.eclipse.ice.proteus.test ...................... SKIPPED
[INFO] org.eclipse.ice.mesh .............................. SKIPPED
[INFO] org.eclipse.ice.mesh.test ......................... SKIPPED
[INFO] org.eclipse.ice.nek5000 ........................... SKIPPED
[INFO] org.eclipse.ice.nek5000.test ...................... SKIPPED
[INFO] gov.lbnl.visit.swt ................................ SKIPPED
[INFO] org.eclipse.ice.viz ............................... SKIPPED
[INFO] org.eclipse.ice.viz.test .......................... SKIPPED
[INFO] org.eclipse.ice.viz.service ....................... SKIPPED
[INFO] org.eclipse.ice.viz.service.test .................. SKIPPED
[INFO] org.eclipse.ice.viz.service.visit ................. SKIPPED
[INFO] org.eclipse.ice.viz.service.visit.test ............ SKIPPED
[INFO] org.eclipse.ice.xolotl ............................ SKIPPED
[INFO] org.eclipse.ice.materials.test .................... SKIPPED
[INFO] org.eclipse.ice.materials.ui ...................... SKIPPED
[INFO] org.eclipse.ice.caebat.batml ...................... SKIPPED
[INFO] org.eclipse.ice.caebat.batml.test ................. SKIPPED
[INFO] org.eclipse.ice.sassena ........................... SKIPPED
[INFO] org.eclipse.ice.sassena.test ...................... SKIPPED
[INFO] org.eclipse.ice.reflectivity ...................... SKIPPED
[INFO] org.eclipse.ice.reflectivity.test ................. SKIPPED
[INFO] ICE Feature ....................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 05:23 min
[INFO] Finished at: 2015-02-03T10:56:58-05:00
[INFO] Final Memory: 174M/1632M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.eclipse.tycho:tycho-surefire-plugin:0.18.1:test (default-test) on project org.eclipse.ice.io.test: There are test failures.
[ERROR] 


On Feb 3, 2015, at 10:51 AM, Wojtowicz, Anna <wojtowicza@xxxxxxxx> wrote:

Yeah, once the CQs are approved, we will require the user to install HDF5 on their own accord, but the Java wrappers will be distributed as part of ICE.
 
Claire, for now, you also need to install HDF-Java/HDF-View: http://www.hdfgroup.org/products/java/release/download.html
 
I don’t know anything about Macs, but I know on Windows, the binary installation does not add the correct paths to the PATH variable. I manually need to add the /{HDF5 install}/lib and /{HDFJava install}/lib directories to my PATH.

Anna
 
From: ice-dev-bounces@xxxxxxxxxxx [mailto:ice-dev-bounces@xxxxxxxxxxx] On Behalf Of Jay Jay Billings
Sent: Tuesday, February 03, 2015 10:41 AM
To: ice developer discussions
Subject: Re: [ice-dev] Fwd: HDF5 Build Issue
 

Our current build instructions do not discuss the third party libraries because they ate not approved yet. If that is the problem here, other than a simple setting  or something, we need to take it off the list.

Jay

On Feb 3, 2015 10:35 AM, "Jordan Deyton" <deytonjh@xxxxxxxx> wrote:
Claire,

To re-iterate Jay's question... Windows, Mac, or Linux?

As a side note, I think the build instructions need to be updated to include HDF Java, not HDF5. HDF5 should only be required if you are building ICE IO. (HDF Java includes pre-compiled versions of HDF5 for its own use, but I'm not sure if they are statically linked.)

Jordan

Jordan Deyton
Oak Ridge National Laboratory
Telephone: (865) 574-1091
Email: deytonjh@xxxxxxxx
On 2/3/2015 5:32 AM, Jay Jay Billings wrote:

Claire, 

Can you send the text error to the dev list please? Ate you building on your Mac?

Jay

---------- Forwarded message ----------
From: "Claire Saunders" <clairenicolesaunders@xxxxxxxxx>
Date: Feb 3, 2015 12:09 AM
Subject: HDF5 Build Issue
To: "Jay Jay Billings" <jayjaybillings@xxxxxxxxx>
Cc: 

Hi Jay, 
 
I am having issues with the build and the HDF5 libraries. I followed the script on http://wiki.eclipse.org/Getting_ICE#Prerequisites but I still can’t get it working. Is there anything else I am missing?
 
Thanks,
Claire

 

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