[ice-build] [eclipse/ice] 231d19: Merge remote-tracking branch 'origin/m

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From: GitHub <noreply@xxxxxxxxxx>
Date: Tue, 24 Feb 2015 13:30:24 -0800
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  Branch: refs/heads/jordan/ParaViewVizService
  Home:   https://github.com/eclipse/ice
  Commit: 231d192846c8bb4aaa8b1306c0b8ebc9b106298a
      https://github.com/eclipse/ice/commit/231d192846c8bb4aaa8b1306c0b8ebc9b106298a
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-01-06 (Tue, 06 Jan 2015)

  Changed paths:
    M README.md
    M repository/org.eclipse.ice.repository/ice.product.launch
    M src/org.eclipse.ice.analysistool/src/org/eclipse/ice/analysistool/IAnalysisTool.java
    M src/org.eclipse.ice.caebat.batml/src/org/eclipse/ice/caebat/batml/BatMLModel.java
    M src/org.eclipse.ice.caebat/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.caebat/OSGi-INF/caebatKVPairComponent.xml
    M src/org.eclipse.ice.caebat/build.properties
    R src/org.eclipse.ice.caebat/caebatCases/Case3CAEBATModel.xml
    R src/org.eclipse.ice.caebat/caebatCases/Case6CAEBATModel.xml
    R src/org.eclipse.ice.caebat/caebatCases/Case7aCAEBATModel.xml
    R src/org.eclipse.ice.caebat/caebatCases/Case7bCAEBATModel.xml
    A src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairBuilder.java
    A src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairItem.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/model/CaebatModel.java
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/model/VisitorEntryCopy.java
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/model/VisitorINI.java
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/kvPair/CAEBATKVPairBuilder.java
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/kvPair/CAEBATKVPairItem.java
    M src/org.eclipse.ice.client.rcp/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.client.widgets.moose/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.client.widgets.moose/build.properties
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-down-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-down-perspective-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-left-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-left-perspective-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-pitch-down-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-pitch-up-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-right-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-right-perspective-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-roll-left-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-roll-right-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-up-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-up-perspective-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-yaw-left-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/arrow-yaw-right-16.png
    A src/org.eclipse.ice.client.widgets.moose/icons/camera.png
    A src/org.eclipse.ice.client.widgets.moose/icons/file_obj.gif
    M src/org.eclipse.ice.client.widgets.moose/plugin.xml
    A src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/GenerateYAMLHandler.java
    A src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/GenerateYAMLWizard.java
    A src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/GenerateYAMLWizardPage.java
    M src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/MOOSEFormEditor.java
    M src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/components/EntryListener.java
    M src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/components/PlantBlockManager.java
    M src/org.eclipse.ice.client.widgets.rcp/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/geometry/GeometryApplication.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/geometry/RenderShape.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/jme/AbstractController.java
    R src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/jme/CustomFlyByCamera.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/jme/EmbeddedView.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/jme/MasterApplication.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/jme/ViewAppState.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/mesh/AbstractMeshController.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/mesh/EdgeController.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/mesh/MeshUpdateHandler.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/mesh/VertexController.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/AbstractPlantController.java
    R src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/CustomTube.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/HeatExchangerController.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/HeatExchangerView.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/JunctionController.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/PipeController.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/PipeView.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/PlantAppState.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/ReactorController.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/ReactorMesh.java
    A src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/TubeMesh.java
    M src/org.eclipse.ice.client.widgets.reactoreditor/src/org/eclipse/ice/client/widgets/reactoreditor/IAnalysisWidgetFactory.java
    M src/org.eclipse.ice.client.widgets.reactoreditor/src/org/eclipse/ice/client/widgets/reactoreditor/ReactorFormEditor.java
    M src/org.eclipse.ice.client.widgets.reactoreditor/src/org/eclipse/ice/client/widgets/reactoreditor/ReactorPage.java
    M src/org.eclipse.ice.client.widgets.reactoreditor/src/org/eclipse/ice/client/widgets/reactoreditor/properties/ReactorComponentPropertySource.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/common/ComponentPropertySection.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/common/TreeCompositeContentProvider.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/common/TreeCompositeViewer.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/DataComponentComposite.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/EMFSectionPage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/EclipseStreamingTextWidget.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/EntryComposite.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEDataComponentSectionPart.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEDetailsPageProvider.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEFormEditor.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEGeometryPage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEMatrixComponentSectionPart.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICESectionPage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICETableComponentSectionPart.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/MeshElementTreeView.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/properties/TreePropertyContentProvider.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/properties/TreePropertySection.java
    M src/org.eclipse.ice.client/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.core/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.core/src/org/eclipse/ice/core/internal/Core.java
    M src/org.eclipse.ice.datastructures/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/Component.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/Composite.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/ICEJAXBHandler.java
    R src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/ICEJAXBManipulator.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/ICEObject.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/IElementSource.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/IUpdateable.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/IUpdateableListener.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/ListComponent.java
    R src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/Persistable.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/WrappedGlazedEventListener.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/componentVisitor/IComponentVisitor.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/componentVisitor/IReactorComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/componentVisitor/SelectiveComponentVisitor.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/AdaptiveTreeComposite.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/BasicEntryContentProvider.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/DataComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/Entry.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/Form.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/MasterDetailsComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/MasterDetailsPair.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/Material.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/MatrixComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/ResourceComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/TableComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/TimeDataComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/TreeComposite.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/ICEXMLProcessor.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/geometry/AbstractShape.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/geometry/ComplexShape.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/geometry/GeometryComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/geometry/IShape.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/geometry/PrimitiveShape.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/geometry/Transformation.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/BezierEdge.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/BoundaryCondition.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/Custom2DShape.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/Edge.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/EdgeProperties.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/Hex.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/MeshComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/Polygon.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/PolygonProperties.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/PolynomialEdge.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/Quad.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/mesh/Vertex.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/painfullySimpleForm/PainfullySimpleForm.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/resource/ICEResource.java
    R src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/updateableComposite/Component.java
    R src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/updateableComposite/Composite.java
    R src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/updateableComposite/IUpdateable.java
    R src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/updateableComposite/IUpdateableListener.java
    M src/org.eclipse.ice.io/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.io/OSGI-INF/ioservice.xml
    M src/org.eclipse.ice.io/build.properties
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSReader.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSWriter.java
    A src/org.eclipse.ice.io/src/org/eclipse/ice/io/serializable/IOService.java
    A src/org.eclipse.ice.io/src/org/eclipse/ice/io/serializable/IReader.java
    A src/org.eclipse.ice.io/src/org/eclipse/ice/io/serializable/IWriter.java
    M src/org.eclipse.ice.item/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.item/OSGi-INF/ItemIO.xml
    A src/org.eclipse.ice.item/OSGi-INF/MOOSEIO.xml
    M src/org.eclipse.ice.item/build.properties
    A src/org.eclipse.ice.item/plugin.xml
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/Item.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/Registry.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/SerializedItemBuilder.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/action/Action.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/action/JobLaunchAction.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/JobLauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/multiLauncher/MultiLauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobprofile/JobProfile.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSELauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/SHARPModel.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/utilities/moose/Block.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/utilities/moose/MOOSEFileHandler.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/utilities/trilinos/Parameter.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/utilities/trilinos/ParameterList.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/KDDAnalysisDocument.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/KDDAnalysisTool.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddmath/IAbstractMatrix.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddmath/IDataMatrix.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddmath/KDDMatrix.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/IStrategyBuilder.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/KDDStrategy.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/KDDStrategyFactory.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/compositestrategy/CompositeStrategy.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/godfreystrategy/AxialPower.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/godfreystrategy/GodfreyBuilder.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/godfreystrategy/GodfreyStrategy.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/godfreystrategy/GodfreySubStrategy.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/godfreystrategy/PinPowerDifference.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/godfreystrategy/RadialPower.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/godfreystrategy/SubStrategyFactory.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/kmeansclustering/Cluster.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/kmeansclustering/ClusterKDDMatrix.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/kmeansclustering/ComparativeKMeansStrategy.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/kmeansclustering/DistanceMeasure.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/kmeansclustering/EuclideanDistanceMeasure.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/kmeansclustering/RawKMeansBuilder.java
    M src/org.eclipse.ice.kdd/src/org/eclipse/ice/kdd/kddstrategy/kmeansclustering/RawKMeansStrategy.java
    M src/org.eclipse.ice.materials.ui/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.materials.ui/src/org/eclipse/ice/materials/ui/MaterialDetailsPage.java
    M src/org.eclipse.ice.materials.ui/src/org/eclipse/ice/materials/ui/MaterialsDatabaseContentProvider.java
    M src/org.eclipse.ice.materials.ui/src/org/eclipse/ice/materials/ui/MaterialsDatabaseLabelProvider.java
    M src/org.eclipse.ice.materials.ui/src/org/eclipse/ice/materials/ui/MaterialsDatabaseMasterDetailsBlock.java
    M src/org.eclipse.ice.materials/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.materials/data/userMatDB.xml
    M src/org.eclipse.ice.materials/src/org/eclipse/ice/materials/CSVDBToXMLConverter.java
    M src/org.eclipse.ice.materials/src/org/eclipse/ice/materials/IMaterialsDatabase.java
    R src/org.eclipse.ice.materials/src/org/eclipse/ice/materials/Material.java
    M src/org.eclipse.ice.materials/src/org/eclipse/ice/materials/XMLMaterialsDatabase.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekModel.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekReader.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekWriter.java
    M src/org.eclipse.ice.persistence.xml/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.persistence.xml/OSGi-INF/xmlPersistenceProvider.xml
    A src/org.eclipse.ice.persistence.xml/src/org/eclipse/ice/persistence/xml/XMLPersistenceProvider.java
    R src/org.eclipse.ice.persistence.xml/src/xmlpp/XMLPersistenceProvider.java
    M src/org.eclipse.ice.proteus/.classpath
    M src/org.eclipse.ice.proteus/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.proteus/src/org/eclipse/ice/proteus/PROTEUSModel.java
    M src/org.eclipse.ice.reactor.perspective/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.reactor.perspective/src/org/eclipse/ice/reactor/perspective/ReactorTreeContentProvider.java
    M src/org.eclipse.ice.reactor.perspective/src/org/eclipse/ice/reactor/perspective/ReactorViewer.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Boundary.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Branch.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/CoreChannel.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/DownComer.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/FlowJunction.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/GeometricalComponent.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/HeatExchanger.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/IdealPump.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Inlet.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Junction.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/MassFlowInlet.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/OneInOneOutJunction.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Outlet.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Pipe.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/PipeToPipeJunction.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/PipeWithHeatStructure.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/PlantComponentReader.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/PlantComponentWriter.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/PlantComposite.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/PointKinetics.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Pump.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Reactor.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/SeparatorDryer.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/SolidWall.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/SpecifiedDensityAndVelocityInlet.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Subchannel.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/SubchannelBranch.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/TDM.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/TimeDependentJunction.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/TimeDependentVolume.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Turbine.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/Valve.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/VolumeBranch.java
    M src/org.eclipse.ice.reactor.plant/src/org/eclipse/ice/reactor/plant/WetWell.java
    M src/org.eclipse.ice.reactor.sfr/src/org/eclipse/ice/reactor/sfr/base/SFRComponent.java
    M src/org.eclipse.ice.reactor.sfr/src/org/eclipse/ice/reactor/sfr/base/SFRComposite.java
    M src/org.eclipse.ice.reactor.sfr/src/org/eclipse/ice/reactor/sfr/core/SFReactor.java
    M src/org.eclipse.ice.reactor.sfr/src/org/eclipse/ice/reactor/sfr/core/assembly/PinAssembly.java
    M src/org.eclipse.ice.reactor.sfr/src/org/eclipse/ice/reactor/sfr/core/assembly/ReflectorAssembly.java
    M src/org.eclipse.ice.reactor/src/org/eclipse/ice/reactor/IGridManager.java
    M src/org.eclipse.ice.reactor/src/org/eclipse/ice/reactor/LWRComponent.java
    M src/org.eclipse.ice.reactor/src/org/eclipse/ice/reactor/LWRComposite.java
    M src/org.eclipse.ice.reactor/src/org/eclipse/ice/reactor/LWRGridManager.java
    M src/org.eclipse.ice.reactor/src/org/eclipse/ice/reactor/LWReactor.java
    M src/org.eclipse.ice.reactor/src/org/eclipse/ice/reactor/pwr/FuelAssembly.java
    M src/org.eclipse.ice.reactor/src/org/eclipse/ice/reactor/pwr/PWRAssembly.java
    M src/org.eclipse.ice.reactor/src/org/eclipse/ice/reactor/pwr/PressurizedWaterReactor.java
    M src/org.eclipse.ice.reactorAnalyzer/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.reactorAnalyzer/src/org/eclipse/ice/reactorAnalyzer/ReactorComposite.java
    M src/org.eclipse.ice.reflectivity/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.reflectivity/src/org/eclipse/ice/reflectivity/ReflectivityModel.java
    M src/org.eclipse.ice.reflectivity/src/org/eclipse/ice/reflectivity/ReflectivityModelBuilder.java
    M src/org.eclipse.ice.viz/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/VizFileViewer.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVDataLoader.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVPlotViewer.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/visit/VisitPlotViewer.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelBuilderTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelTester.java
    R tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/INIVisitorTester.java
    R tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/VisitorEntryCopyTester.java
    M tests/org.eclipse.ice.client.widgets.rcp.test/src/org/eclipse/ice/client/widgets/mesh/test/TestMeshController.java
    M tests/org.eclipse.ice.client.widgets.reactoreditor.test/src/org/eclipse/ice/client/widgets/reactoreditor/test/AnalysisToolCompositeTester.java
    M tests/org.eclipse.ice.client.widgets.test/src/org/eclipse/ice/client/widgets/test/ICESectionPageTester.java
    M tests/org.eclipse.ice.datastructures.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/AbstractShapeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/AdaptiveTreeCompositeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/BasicEntryContentProviderTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/BoundaryConditionTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ComplexShapeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/Custom2DShapeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/DataComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EdgePropertiesTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EdgeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EntryTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/FormTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/GeometryComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/GeometryTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEJAXBHandlerTester.java
    R tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEJAXBManipulatorTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEListTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEObjectTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEResourceTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ListComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/MasterDetailsPairTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/MasterDetailsTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/MaterialTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/MatrixComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/MeshComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/PolygonPropertiesTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/PolygonTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/PrimitiveShapeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/QuadTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ResourceComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/TableComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/TestComponentListener.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/TestEdge.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/TestMaterialFactory.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/TestVisitor.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/TimeDataComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/TransformationTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/TreeCompositeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/VertexTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/WrappedGlazedEventListenerTester.java
    M tests/org.eclipse.ice.filesimulation/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/hdf/test/HdfIORegistryTester.java
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSReaderTester.java
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSWriterTester.java
    A tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/serializable/test/IOServiceTester.java
    M tests/org.eclipse.ice.item.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherFormTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobProfileTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/MultiLauncherTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ParameterListTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/SerializedItemBuilderTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/TestItem.java
    A tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/TestItemBuilder.java
    A tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/nuclear/MOOSELauncherTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/nuclear/MOOSEModelTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/AxialPowerTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/ClusterKDDMatrixTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/ClusterTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/EuclideanDistanceMeasureTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/GodfreyIntegrationTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/GodfreyStrategyTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/IDataMatrixTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/KDDAnalysisDocumentTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/KDDAnalysisToolTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/KDDMatrixTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/KDDStrategyFactoryTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/KMeansIntegrationTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/PinPowerDifferenceTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/RadialPowerTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/RawKMeansStrategyTester.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/fakeobjects/FakeClusterKDDMatrix.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/fakeobjects/FakeStrategy.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/fakeobjects/FakeStrategyBuilder.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/fakeobjects/FakeStrategyFactory.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/fakeobjects/FakeSubStrategy.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/fakeobjects/FakeSubStrategyFactory.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/fakeobjects/SimpleData.java
    M tests/org.eclipse.ice.kdd.test/src/org/eclipse/ice/kdd/test/fakeobjects/SimpleDataProvider.java
    R tests/org.eclipse.ice.materials.test/src/org/eclipse/ice/materials/test/MaterialTester.java
    M tests/org.eclipse.ice.materials.test/src/org/eclipse/ice/materials/test/TestMaterialFactory.java
    M tests/org.eclipse.ice.materials.test/src/org/eclipse/ice/materials/test/XMLMaterialDatabaseTester.java
    M tests/org.eclipse.ice.nek5000.test/src/org/eclipse/ice/nek5000/test/NekReaderTester.java
    M tests/org.eclipse.ice.nek5000.test/src/org/eclipse/ice/nek5000/test/NekWriterTester.java
    M tests/org.eclipse.ice.persistence.xml.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java
    M tests/org.eclipse.ice.proteus.test/.classpath
    M tests/org.eclipse.ice.proteus.test/.settings/org.eclipse.jdt.core.prefs
    M tests/org.eclipse.ice.proteus.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.proteus.test/src/org/eclipse/ice/proteus/test/PROTEUSModelTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/BoundaryTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/BranchTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/CoreChannelTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/DownComerTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/FlowJunctionTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/GeometricalComponentTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/HeatExchangerTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/IdealPumpTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/InletTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/JunctionTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/MassFlowInletTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/OneInOneOutJunctionTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/OutletTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/PipeTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/PipeToPipeJunctionTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/PipeWithHeatStructureTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/PlantComponentTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/PlantCompositeTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/PointKineticsTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/PumpTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/ReactorTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/SeparatorDryerTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/SolidWallTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/SpecifiedDensityAndVelocityInletTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/SubchannelBranchTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/SubchannelTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/TDMTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/TimeDependentJunctionTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/TimeDependentVolumeTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/TurbineTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/ValveTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/VolumeBranchTester.java
    M tests/org.eclipse.ice.reactor.plant.test/src/org/eclipse/ice/reactor/plant/test/WetWellTester.java
    M tests/org.eclipse.ice.reactor.sfr.test/src/org/eclipse/ice/reactor/sfr/test/SFRCompositeTester.java
    M tests/org.eclipse.ice.reactor.test/src/org/eclipse/ice/reactor/test/LWReactorTester.java
    M tests/org.eclipse.ice.reactor.test/src/org/eclipse/ice/reactor/test/pwr/FuelAssemblyTester.java
    M tests/org.eclipse.ice.reactor.test/src/org/eclipse/ice/reactor/test/pwr/PWRAssemblyTester.java
    M tests/org.eclipse.ice.reactor.test/src/org/eclipse/ice/reactor/test/pwr/PWReactorTester.java
    M tests/org.eclipse.ice.reflectivity.test/src/org/eclipse/ice/reflectivity/test/ReflectivityModelTester.java
    M tests/org.eclipse.ice.tablecomponenttester/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.viz.test/src/org/eclipse/ice/viz/plotviewer/test/CSVDataLoaderTester.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into mccaskey/emfxml

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: 16b392aed67bc093948da8a4a251a9dd3dbb5aca
      https://github.com/eclipse/ice/commit/16b392aed67bc093948da8a4a251a9dd3dbb5aca
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-01-07 (Wed, 07 Jan 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFEntry.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFTreeCompositeTester.java

  Log Message:
  -----------
  Pushing some minor updates in the EMF stuff to get rid of unnecessary
recursion in generating child exemplars. 

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: 12717d2a5486880033afdabcf5b44f429b9498d0
      https://github.com/eclipse/ice/commit/12717d2a5486880033afdabcf5b44f429b9498d0
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-01-16 (Fri, 16 Jan 2015)

  Changed paths:
    M features/org.eclipse.ice.feature/feature.xml
    M org.eclipse.ice.build/pom.xml
    M repository/org.eclipse.ice.repository/ice.product
    M repository/org.eclipse.ice.repository/ice.product.launch
    M src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/MOOSEFormEditor.java
    M src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/components/PlantBlockManager.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/jme/ViewAppState.java
    M src/org.eclipse.ice.client.widgets.rcp/src/org/eclipse/ice/client/widgets/reactoreditor/plant/PlantAppState.java
    M src/org.eclipse.ice.client.widgets/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.client.widgets/OSGI-INF/formEditorVizService.xml
    M src/org.eclipse.ice.client.widgets/build.properties
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/EclipseUIWidgetFactory.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEFormEditor.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEFormPage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICESectionPage.java
    A src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ListComponentSectionPage.java
    A src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/viz/service/IPlot.java
    A src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/viz/service/IVizService.java
    A src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/viz/service/IVizServiceFactory.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/wizards/NewItemWizard.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/ListComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/resource/ICEResource.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/resource/ResourceHandler.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/resource/VizResource.java
    M src/org.eclipse.ice.item/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.item/src/org/eclipse/ice/item/AbstractItemBuilder.java
    A src/org.eclipse.ice.item/src/org/eclipse/ice/item/AbstractModelBuilder.java
    A src/org.eclipse.ice.item/src/org/eclipse/ice/item/IActionFactory.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/Item.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/action/JobLaunchAction.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/JobLauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/messaging/Message.java
    A src/org.eclipse.ice.item/src/org/eclipse/ice/item/model/AbstractModelBuilder.java
    R src/org.eclipse.ice.item/src/org/eclipse/ice/item/model/ModelBuilder.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/utilities/moose/MOOSEFileHandler.java
    A src/org.eclipse.ice.materials.ui/src/org/eclipse/ice/materials/ui/AddMaterialWizard.java
    A src/org.eclipse.ice.materials.ui/src/org/eclipse/ice/materials/ui/AddMaterialWizardPage.java
    M src/org.eclipse.ice.materials.ui/src/org/eclipse/ice/materials/ui/MaterialDetailsPage.java
    M src/org.eclipse.ice.materials.ui/src/org/eclipse/ice/materials/ui/MaterialsDatabaseMasterDetailsBlock.java
    M src/org.eclipse.ice.materials.ui/src/org/eclipse/ice/materials/ui/MaterialsDatabaseMasterDetailsPage.java
    M src/org.eclipse.ice.materials/data/userMatDB.xml
    M src/org.eclipse.ice.reflectivity/src/org/eclipse/ice/reflectivity/ReflectivityModel.java
    A src/org.eclipse.ice.viz.service.visit/.classpath
    A src/org.eclipse.ice.viz.service.visit/.gitignore
    A src/org.eclipse.ice.viz.service.visit/.project
    A src/org.eclipse.ice.viz.service.visit/.settings/org.eclipse.jdt.core.prefs
    A src/org.eclipse.ice.viz.service.visit/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.viz.service.visit/OSGI-INF/visitVisService.xml
    A src/org.eclipse.ice.viz.service.visit/build.properties
    A src/org.eclipse.ice.viz.service.visit/plugin.xml
    A src/org.eclipse.ice.viz.service.visit/pom.xml
    A src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPlot.java
    A src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPreferenceInitializer.java
    A src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPreferencePage.java
    A src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItVizService.java
    A src/org.eclipse.ice.viz.service/.classpath
    A src/org.eclipse.ice.viz.service/.gitignore
    A src/org.eclipse.ice.viz.service/.project
    A src/org.eclipse.ice.viz.service/.settings/org.eclipse.jdt.core.prefs
    A src/org.eclipse.ice.viz.service/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.viz.service/OSGI-INF/vizFactory.xml
    A src/org.eclipse.ice.viz.service/build.properties
    A src/org.eclipse.ice.viz.service/plugin.xml
    A src/org.eclipse.ice.viz.service/pom.xml
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/AbstractVizPreferenceInitializer.java
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/AbstractVizPreferencePage.java
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/BasicVizServiceFactory.java
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/VizPreferenceInitializer.java
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/VizPreferencePage.java
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVPlot.java
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVVizService.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/AddFileSetAction.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/AddLocalFileAction.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/AddRemoteFileAction.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/AddTimeDependentSILOSetAction.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/VizFileViewer.java
    R src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/VizResource.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/AddCSVSeriesAction.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVData.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVDataLoader.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVDataProvider.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVDataTableViewer.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVPlotEditor.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVPlotViewer.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CreateCSVPlotAction.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/SeriesProvider.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/visit/AddVisitPlotAction.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/visit/VisitEditor.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/visit/VisitPlotViewer.java
    M tests/org.eclipse.ice.caebat.batml.test/src/org/eclipse/ice/caebat/batml/test/BatMLModelTester.java
    M tests/org.eclipse.ice.client.test/src/org/eclipse/ice/client/test/ItemProcessorTester.java
    M tests/org.eclipse.ice.client.widgets.reactoreditor.test/.gitignore
    M tests/org.eclipse.ice.client.widgets.reactoreditor.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.client.widgets.reactoreditor.test/src/org/eclipse/ice/client/widgets/reactoreditor/test/AnalysisToolCompositeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEResourceTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ResourceHandlerTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/VizResourceTester.java
    A tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/AbstractItemBuilderTester.java
    A tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/FakeActionFactory.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/FakeItemBuilder.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/MultiLauncherTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/TestItem.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/TestJobLauncher.java
    M tests/org.eclipse.ice.proteus.test/.gitignore
    M tests/org.eclipse.ice.reflectivity.test/src/org/eclipse/ice/reflectivity/test/ReflectivityModelTester.java
    A tests/org.eclipse.ice.viz.service.test/.classpath
    A tests/org.eclipse.ice.viz.service.test/.gitignore
    A tests/org.eclipse.ice.viz.service.test/.project
    A tests/org.eclipse.ice.viz.service.test/.settings/org.eclipse.jdt.core.prefs
    A tests/org.eclipse.ice.viz.service.test/META-INF/MANIFEST.MF
    A tests/org.eclipse.ice.viz.service.test/build.properties
    A tests/org.eclipse.ice.viz.service.test/pom.xml
    A tests/org.eclipse.ice.viz.service.test/src/org/eclipse/ice/viz/service/test/BasicVizServiceFactoryTester.java
    A tests/org.eclipse.ice.viz.service.test/src/org/eclipse/ice/viz/service/test/CSVPlotTester.java
    A tests/org.eclipse.ice.viz.service.test/src/org/eclipse/ice/viz/service/test/CSVVizServiceTester.java
    A tests/org.eclipse.ice.viz.service.test/src/org/eclipse/ice/viz/service/test/FakeVizService.java
    A tests/org.eclipse.ice.viz.service.visit.test/.classpath
    A tests/org.eclipse.ice.viz.service.visit.test/.gitignore
    A tests/org.eclipse.ice.viz.service.visit.test/.project
    A tests/org.eclipse.ice.viz.service.visit.test/.settings/org.eclipse.jdt.core.prefs
    A tests/org.eclipse.ice.viz.service.visit.test/META-INF/MANIFEST.MF
    A tests/org.eclipse.ice.viz.service.visit.test/build.properties
    A tests/org.eclipse.ice.viz.service.visit.test/pom.xml
    A tests/org.eclipse.ice.viz.service.visit.test/src/org/eclipse/ice/viz/service/visit/test/VisItVizServiceTester.java
    M tests/org.eclipse.ice.viz.test/src/org/eclipse/ice/viz/plotviewer/test/CSVDataProviderTester.java
    R tests/org.eclipse.ice.viz.test/src/org/eclipse/ice/viz/test/VizResourceTester.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into mccaskey/emfxml

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: f2e7ca01f404e9d9d5ea113758254be1ddbf84ae
      https://github.com/eclipse/ice/commit/f2e7ca01f404e9d9d5ea113758254be1ddbf84ae
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-01-16 (Fri, 16 Jan 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFEntry.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFTreeCompositeTester.java

  Log Message:
  -----------
  Committing fix to checkLoadFromXML bug. Cleaned up EMFEntry and set it
up to correctly load existing ecore values. 

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: 3f8ffbbeed260881448a2891954929846eedf4f6
      https://github.com/eclipse/ice/commit/3f8ffbbeed260881448a2891954929846eedf4f6
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-01-25 (Sun, 25 Jan 2015)

  Changed paths:
    A src/org.eclipse.ice.caebat/CaebatModel/example_input_keyvalue
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairItem.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSWriter.java

  Log Message:
  -----------
  Updating Caebat Launcher to use customized KV pair items generated by
the user.


  Commit: 859138b3113318a8eebb7411d42846767b07ab93
      https://github.com/eclipse/ice/commit/859138b3113318a8eebb7411d42846767b07ab93
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-01-27 (Tue, 27 Jan 2015)

  Changed paths:
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/model/CaebatModel.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSReader.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSWriter.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelBuilderTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelTester.java
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSReaderTester.java
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSWriterTester.java

  Log Message:
  -----------
  Updating the Caebat plugin stack to handle projects, files, and
resources in a more Eclipse-y manner.


  Commit: 480e52c0b1d4f47499bc607d0089f5a077425adb
      https://github.com/eclipse/ice/commit/480e52c0b1d4f47499bc607d0089f5a077425adb
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-01-29 (Thu, 29 Jan 2015)

  Changed paths:
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/Component.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/Composite.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/IComponentListener.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/IUpdateable.h
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java

  Log Message:
  -----------
  Revert "Adding some test code to test the copyDirectory method in ItemTester."

This reverts commit 26739bbf289128978eba9119163261003ac58347.


  Commit: d756a418c1acbd26e82fc30d715f75f00de7fcec
      https://github.com/eclipse/ice/commit/d756a418c1acbd26e82fc30d715f75f00de7fcec
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-01-29 (Thu, 29 Jan 2015)

  Changed paths:
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java

  Log Message:
  -----------
  Adding back in Andrew's changes to ItemTester after having to replace
some native files that were unintentionally removed. Here's the previous
commit message:

"Adding some test code to test the copyDirectory method in ItemTester."

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: b0f327ae718d5da31ad288c0f1922053ebf28fd8
      https://github.com/eclipse/ice/commit/b0f327ae718d5da31ad288c0f1922053ebf28fd8
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-01-29 (Thu, 29 Jan 2015)

  Changed paths:
    M CMakeLists.txt
    M examples/CMakeLists.txt
    M src/native/org.eclipse.ice.datastructures.native/CMakeLists.txt
    M src/native/org.eclipse.ice.io.native/hdf/CMakeLists.txt
    M src/native/org.eclipse.ice.reactor.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/.cproject
    A src/native/org.eclipse.ice.reactor.sfr.native/.project
    A src/native/org.eclipse.ice.reactor.sfr.native/AssemblyType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/IGridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/ISFRComponentVisitor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.h
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.h
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.h
    R src/native/org.eclipse.ice.reactor.sfr/.cproject
    R src/native/org.eclipse.ice.reactor.sfr/AssemblyType.h
    R src/native/org.eclipse.ice.reactor.sfr/CMakeLists.txt
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.cpp
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.h
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.h
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/IGridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/ISFRComponentVisitor.h
    R src/native/org.eclipse.ice.reactor.sfr/Material.cpp
    R src/native/org.eclipse.ice.reactor.sfr/Material.h
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.cpp
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.h
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.cpp
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinType.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.h
    M tests/native/org.eclipse.ice.reactor.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.cproject
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.project
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/FeatureSetTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridDataManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialBlockTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/PinAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/ReflectorAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/RingTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRComponentTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRCompositeTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRDataTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRPinTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRRodTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorIOHandlerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/.cproject
    R tests/native/org.eclipse.ice.reactor.sfr.test/CMakeLists.txt
    R tests/native/org.eclipse.ice.reactor.sfr.test/FeatureSetTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridDataManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialBlockTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/PinAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/ReflectorAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/RingTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRComponentTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRCompositeTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRDataTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRPinTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRRodTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorIOHandlerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorTester.cpp

  Log Message:
  -----------
  Renamed the native SFR packages and folders to be consistent with the
other native packages. (I started on this because the native and
non-native SFR folders had the same name, which confused SDC's git repo
tasks)

Fixed all of the CMakeLists that were referring to "license" rather than
"LICENSE", which is in the main ICE directory. This was breaking the
CMake build.

Commented out the Doxygen bits from the main CMakeLists because the
UseDoxygen script and its input file are not in the git repo.

Fixed a memory leak in the native SFR Ring class. Essentially there were
a couple of undefined primitives when certain constructors were used.

With these changes, I was able to build ICE IO and the SFR library. All
tests pass.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 30f3b839d0188cb5e5fb27cde565be198c998c2c
      https://github.com/eclipse/ice/commit/30f3b839d0188cb5e5fb27cde565be198c998c2c
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-01-29 (Thu, 29 Jan 2015)

  Changed paths:
    R src/native/org.eclipse.ice.reactor.sfr/.project
    R tests/native/org.eclipse.ice.reactor.sfr.test/.project

  Log Message:
  -----------
  I apparently forgot to delete the old folders (sfr and sfr.test, which
are now in sfr.native and sfr.native.test).

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: bcc9e90981327b40ac590bb41a78fc3ea148a6c5
      https://github.com/eclipse/ice/commit/bcc9e90981327b40ac590bb41a78fc3ea148a6c5
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-01-29 (Thu, 29 Jan 2015)

  Changed paths:
    M src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.h
    M src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.h

  Log Message:
  -----------
  I'm not sure why the ifndefs got changed on these two files... something
automatic no doubt. It's pretty harmless, but I'm restoring them to
their previous values, since they are kind of long.

Native build builds and passes all tests...

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: edac02fd18c879862cddcf712942beae7b68c126
      https://github.com/eclipse/ice/commit/edac02fd18c879862cddcf712942beae7b68c126
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-01-30 (Fri, 30 Jan 2015)

  Changed paths:
    M src/native/org.eclipse.ice.updater/CMakeLists.txt
    R src/native/org.eclipse.ice.updater/Doxyfile.in
    R src/native/org.eclipse.ice.updater/UseDoxygen.cmake

  Log Message:
  -----------
  Removing a Doxygen CMake script that should not be in the repository.

I also commented out the CMake code that requested said script from the
updater's CMakeLists.txt.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 1b73fe13f8d2bb4e89f9c6a8eb86614b5d056df3
      https://github.com/eclipse/ice/commit/1b73fe13f8d2bb4e89f9c6a8eb86614b5d056df3
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-01-30 (Fri, 30 Jan 2015)

  Changed paths:
    M CMakeLists.txt
    M examples/CMakeLists.txt
    M src/native/org.eclipse.ice.datastructures.native/CMakeLists.txt
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/Component.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/Composite.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/IComponentListener.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/IUpdateable.h
    M src/native/org.eclipse.ice.io.native/hdf/CMakeLists.txt
    M src/native/org.eclipse.ice.reactor.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/.cproject
    A src/native/org.eclipse.ice.reactor.sfr.native/.project
    A src/native/org.eclipse.ice.reactor.sfr.native/AssemblyType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/IGridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/ISFRComponentVisitor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.h
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.h
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.h
    R src/native/org.eclipse.ice.reactor.sfr/.cproject
    R src/native/org.eclipse.ice.reactor.sfr/.project
    R src/native/org.eclipse.ice.reactor.sfr/AssemblyType.h
    R src/native/org.eclipse.ice.reactor.sfr/CMakeLists.txt
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.cpp
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.h
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.h
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/IGridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/ISFRComponentVisitor.h
    R src/native/org.eclipse.ice.reactor.sfr/Material.cpp
    R src/native/org.eclipse.ice.reactor.sfr/Material.h
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.cpp
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.h
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.cpp
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinType.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.h
    M src/native/org.eclipse.ice.updater/CMakeLists.txt
    R src/native/org.eclipse.ice.updater/Doxyfile.in
    R src/native/org.eclipse.ice.updater/UseDoxygen.cmake
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/serializable/IOService.java
    M tests/native/org.eclipse.ice.reactor.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.cproject
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.project
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/FeatureSetTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridDataManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialBlockTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/PinAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/ReflectorAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/RingTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRComponentTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRCompositeTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRDataTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRPinTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRRodTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorIOHandlerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/.cproject
    R tests/native/org.eclipse.ice.reactor.sfr.test/.project
    R tests/native/org.eclipse.ice.reactor.sfr.test/CMakeLists.txt
    R tests/native/org.eclipse.ice.reactor.sfr.test/FeatureSetTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridDataManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialBlockTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/PinAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/ReflectorAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/RingTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRComponentTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRCompositeTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRDataTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRPinTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRRodTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorIOHandlerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorTester.cpp

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into andrew/caebat


  Commit: 380ddd7a48254c9bfdf12f4c7d7aa703b85436cd
      https://github.com/eclipse/ice/commit/380ddd7a48254c9bfdf12f4c7d7aa703b85436cd
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-01-30 (Fri, 30 Jan 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/ResourceComponent.java

  Log Message:
  -----------
  First pass at converting ResourceComponent to a subclass of
ListComponent. Still need to figure out a different way to implement
getResources(). (Preferably in a way that doesn't break everything...)

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 24ffffb064c279929a195d30954c0792475b3a21
      https://github.com/eclipse/ice/commit/24ffffb064c279929a195d30954c0792475b3a21
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-01-30 (Fri, 30 Jan 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/ResourceComponent.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ResourceComponentTester.java

  Log Message:
  -----------
  Removed unused imports and adding tester class.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 84bf2f4dc19f2df2255558c30ea5a1929bbab855
      https://github.com/eclipse/ice/commit/84bf2f4dc19f2df2255558c30ea5a1929bbab855
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-01-30 (Fri, 30 Jan 2015)

  Changed paths:
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairBuilder.java
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairItem.java
    A src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CaebatKVPair.java
    A src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CaebatKVPairBuilder.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/model/CaebatModel.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSWriter.java
    A tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/kvPair/test/CaebatKVPairBuilderTester.java
    A tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/kvPair/test/CaebatKVPairTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/launcher/test/CaebatLauncherBuilderTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/launcher/test/CaebatLauncherTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelTester.java
    M tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java

  Log Message:
  -----------
  Adding new tests for the Caebat KV Pair item, renaming for consistency.
Also adding documentation and general cleanup of other Caebat Plugin
Classes.


  Commit: 03bbb69ae3dfb6b35abc5b38d8c1604c9e422765
      https://github.com/eclipse/ice/commit/03bbb69ae3dfb6b35abc5b38d8c1604c9e422765
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-01-30 (Fri, 30 Jan 2015)

  Changed paths:
    A .project
    M src/org.eclipse.ice.caebat/OSGi-INF/caebatKVPairComponent.xml
    M src/org.eclipse.ice.caebat/build.properties

  Log Message:
  -----------
  Updating files for new Caebat KV Pair naming.


  Commit: f32ec32e6ab963e8d81f928cb87dcde324d9ff11
      https://github.com/eclipse/ice/commit/f32ec32e6ab963e8d81f928cb87dcde324d9ff11
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-01-31 (Sat, 31 Jan 2015)

  Changed paths:
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CaebatKVPair.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/model/CaebatModel.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSWriter.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/kvPair/test/CaebatKVPairTester.java
    M tests/org.eclipse.ice.persistence.xml.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java

  Log Message:
  -----------
  Swapping testing on persistence tests so that the Caebat KV Pair Item
can load from defaults from inside of the plugin, updating the ways that
the IFiles are handled by the Caebat Model, KV Pair generator, and
Launcher to be more stable.


  Commit: 079482c88eea66dbf0db03336d88cda619d80f9c
      https://github.com/eclipse/ice/commit/079482c88eea66dbf0db03336d88cda619d80f9c
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-01-31 (Sat, 31 Jan 2015)

  Changed paths:
    M CMakeLists.txt
    M examples/CMakeLists.txt
    M features/org.eclipse.ice.feature/feature.xml
    M org.eclipse.ice.build/pom.xml
    M org.eclipse.ice.target.kepler/kepler_rcp.target
    M org.eclipse.ice.target.luna/luna.target
    M repository/org.eclipse.ice.repository/ice.product.launch
    M src/native/org.eclipse.ice.datastructures.native/CMakeLists.txt
    M src/native/org.eclipse.ice.io.native/hdf/CMakeLists.txt
    M src/native/org.eclipse.ice.reactor.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/.cproject
    A src/native/org.eclipse.ice.reactor.sfr.native/.project
    A src/native/org.eclipse.ice.reactor.sfr.native/AssemblyType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/IGridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/ISFRComponentVisitor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.h
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.h
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.h
    R src/native/org.eclipse.ice.reactor.sfr/.cproject
    R src/native/org.eclipse.ice.reactor.sfr/.project
    R src/native/org.eclipse.ice.reactor.sfr/AssemblyType.h
    R src/native/org.eclipse.ice.reactor.sfr/CMakeLists.txt
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.cpp
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.h
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.h
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/IGridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/ISFRComponentVisitor.h
    R src/native/org.eclipse.ice.reactor.sfr/Material.cpp
    R src/native/org.eclipse.ice.reactor.sfr/Material.h
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.cpp
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.h
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.cpp
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinType.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.h
    M src/native/org.eclipse.ice.updater/CMakeLists.txt
    R src/native/org.eclipse.ice.updater/Doxyfile.in
    R src/native/org.eclipse.ice.updater/UseDoxygen.cmake
    A src/org.eclipse.ice.caebat/CaebatModel/example_ini.conf
    M src/org.eclipse.ice.caebat/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.caebat/build.properties
    A src/org.eclipse.ice.caebat/data/case_6.conf
    A src/org.eclipse.ice.caebat/data/case_6.dat
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairItem.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/model/CaebatModel.java
    M src/org.eclipse.ice.io/.classpath
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSReader.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSWriter.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/serializable/IOService.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/Item.java
    M src/org.eclipse.ice.materials.ui/build.properties
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVDataLoader.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/visit/VisitEditor.java
    M tests/native/org.eclipse.ice.reactor.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.cproject
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.project
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/FeatureSetTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridDataManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialBlockTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/PinAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/ReflectorAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/RingTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRComponentTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRCompositeTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRDataTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRPinTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRRodTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorIOHandlerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/.cproject
    R tests/native/org.eclipse.ice.reactor.sfr.test/.project
    R tests/native/org.eclipse.ice.reactor.sfr.test/CMakeLists.txt
    R tests/native/org.eclipse.ice.reactor.sfr.test/FeatureSetTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridDataManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialBlockTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/PinAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/ReflectorAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/RingTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRComponentTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRCompositeTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRDataTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRPinTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRRodTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorIOHandlerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorTester.cpp
    A tests/org.eclipse.ice.caebat.test/CaebatModel/example_ini.conf
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/launcher/test/CaebatLauncherTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelBuilderTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelTester.java
    M tests/org.eclipse.ice.client.widgets.reactoreditor.test/pom.xml
    M tests/org.eclipse.ice.io.test/.classpath
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSReaderTester.java
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSWriterTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/TestItem.java
    M tests/org.eclipse.ice.viz.service.test/pom.xml
    M tests/org.eclipse.ice.viz.test/src/org/eclipse/ice/viz/plotviewer/test/CSVDataLoaderTester.java

  Log Message:
  -----------
  Merging master into mccaskey/emfxml

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: 1a16b843dd1c1370577353e6877fb75cef7ff998
      https://github.com/eclipse/ice/commit/1a16b843dd1c1370577353e6877fb75cef7ff998
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-01-31 (Sat, 31 Jan 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java

  Log Message:
  -----------
  Updated copy tests for EMFComponent. Still have a UI JFace tree issue
with adding multiple children of same type. 

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: 6177782263fc1749f99b80bdc68d2a3115e5223d
      https://github.com/eclipse/ice/commit/6177782263fc1749f99b80bdc68d2a3115e5223d
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-02-02 (Mon, 02 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java

  Log Message:
  -----------
  Committing fix for issues in EMFComponent. Got rid of recursive
EMFTreeComposite creation upon XML file load. Fixed a bug in
EMFTreeComposite.getChildExemplars that was looping over
EClass.getEReferences instead of EClass.getEAllReferences. 

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: 1cd1a4537b814b02b8763d2c4c2a77cb83203fde
      https://github.com/eclipse/ice/commit/1cd1a4537b814b02b8763d2c4c2a77cb83203fde
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-02-02 (Mon, 02 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/.project
    M src/org.eclipse.ice.datastructures/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.datastructures/OSGI-INF/jaxbclassprovider.xml
    M src/org.eclipse.ice.datastructures/build.properties
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/Form.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/ICEJAXBClassProvider.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/IJAXBClassProvider.java
    M src/org.eclipse.ice.persistence.xml/OSGi-INF/xmlPersistenceProvider.xml
    M src/org.eclipse.ice.persistence.xml/src/org/eclipse/ice/persistence/xml/XMLPersistenceProvider.java
    M src/org.eclipse.ice.proteus/src/org/eclipse/ice/proteus/PROTEUSModel.java
    M tests/org.eclipse.ice.datastructures.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/FormTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEJAXBClassProviderTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherFormTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherTester.java
    M tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java
    M tests/org.eclipse.ice.proteus.test/src/org/eclipse/ice/proteus/test/PROTEUSModelTester.java

  Log Message:
  -----------
  Committing new architecture for extending the way the
XMLPersistenceProvider persists our data structures. 

1. Added IJAXBClassProvider and ICEJAXBClassProvider implementation.
This interface exposes a getClasses() : Class[*] method that can be used
by the XMLPersistenceProvider to expose all relevant Classes when
creating the JAXBContext. 
2. Added registerClassProvider() method to XMLPersistenceProvider and
exposed it to the OSGi DS so that IJAXBClassProviders can be added and
used during XML persistence. 
3. Updated the Form JAXB annotations to not directly reference Component
realizations. 
4. Implemented tests for this new functionality and updated all tests
affected by this.



Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: 7b10bf56b7c906e1c00570072f3d23449a7ced39
      https://github.com/eclipse/ice/commit/7b10bf56b7c906e1c00570072f3d23449a7ced39
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-02-02 (Mon, 02 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFEntry.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    M src/org.eclipse.ice.io/.classpath
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFTreeCompositeTester.java
    M tests/org.eclipse.ice.io.test/.classpath

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/mccaskey/emfxml' into
mccaskey/xml_persistence_update

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: ade4925085d649b95fb5623ce4363f918207b59c
      https://github.com/eclipse/ice/commit/ade4925085d649b95fb5623ce4363f918207b59c
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-02 (Mon, 02 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/ResourceComponent.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ResourceComponentTester.java

  Log Message:
  -----------
  Did away with generic inheritance for ResourceComponent. Everything
seems to work.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 6ba4d7a278dbaf5a751056726f6fe3ff460529aa
      https://github.com/eclipse/ice/commit/6ba4d7a278dbaf5a751056726f6fe3ff460529aa
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-02-02 (Mon, 02 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.io/.classpath
    M src/org.eclipse.ice.io/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.io.test/.classpath
    M tests/org.eclipse.ice.io.test/META-INF/MANIFEST.MF

  Log Message:
  -----------
  The .classpath files in the IO bundles were referencing Java 1.6, but
using stuff from java.nio. Updating the classpaths to reference Java 1.7

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: 20904b0de21d857d64a7250bce544d64339b7def
      https://github.com/eclipse/ice/commit/20904b0de21d857d64a7250bce544d64339b7def
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-02-02 (Mon, 02 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.io/.classpath
    M src/org.eclipse.ice.io/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.io.test/.classpath
    M tests/org.eclipse.ice.io.test/META-INF/MANIFEST.MF

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into andrew/caebat

Signed-off-by: arbennett <bennettar@xxxxxxxx>


  Commit: 27c0ea2636be2841ddc2b4fe490440ad5a9e6875
      https://github.com/eclipse/ice/commit/27c0ea2636be2841ddc2b4fe490440ad5a9e6875
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-03 (Tue, 03 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/JobLauncher.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherTester.java

  Log Message:
  -----------
  Updated JobLauncher to use Item.getResource() to get ICEResources.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 1fe14ebfde9816a862ea8eeadd9d6ada78741d1a
      https://github.com/eclipse/ice/commit/1fe14ebfde9816a862ea8eeadd9d6ada78741d1a
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-03 (Tue, 03 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/ResourceComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/resource/ICEResource.java

  Log Message:
  -----------
  ResourceComponent now keeps a copy of the list's source locally for JAXB
to marshal it, which it does correctly now. Fixes bug 459069.

Removed unusued imports from ICEResource.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 18203def4707559418b94630a1b3a134125e6511
      https://github.com/eclipse/ice/commit/18203def4707559418b94630a1b3a134125e6511
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-04 (Wed, 04 Feb 2015)

  Changed paths:
    A .project
    M CMakeLists.txt
    M examples/CMakeLists.txt
    M src/native/org.eclipse.ice.datastructures.native/CMakeLists.txt
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/Component.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/Composite.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/IComponentListener.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/IUpdateable.h
    M src/native/org.eclipse.ice.io.native/hdf/CMakeLists.txt
    M src/native/org.eclipse.ice.reactor.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/.cproject
    A src/native/org.eclipse.ice.reactor.sfr.native/.project
    A src/native/org.eclipse.ice.reactor.sfr.native/AssemblyType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/IGridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/ISFRComponentVisitor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.h
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.h
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.h
    R src/native/org.eclipse.ice.reactor.sfr/.cproject
    R src/native/org.eclipse.ice.reactor.sfr/.project
    R src/native/org.eclipse.ice.reactor.sfr/AssemblyType.h
    R src/native/org.eclipse.ice.reactor.sfr/CMakeLists.txt
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.cpp
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.h
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.h
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/IGridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/ISFRComponentVisitor.h
    R src/native/org.eclipse.ice.reactor.sfr/Material.cpp
    R src/native/org.eclipse.ice.reactor.sfr/Material.h
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.cpp
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.h
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.cpp
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinType.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.h
    M src/native/org.eclipse.ice.updater/CMakeLists.txt
    R src/native/org.eclipse.ice.updater/Doxyfile.in
    R src/native/org.eclipse.ice.updater/UseDoxygen.cmake
    A src/org.eclipse.ice.caebat/CaebatModel/example_input_keyvalue
    M src/org.eclipse.ice.caebat/OSGi-INF/caebatKVPairComponent.xml
    M src/org.eclipse.ice.caebat/build.properties
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairBuilder.java
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairItem.java
    A src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CaebatKVPair.java
    A src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CaebatKVPairBuilder.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/model/CaebatModel.java
    M src/org.eclipse.ice.io/.classpath
    M src/org.eclipse.ice.io/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSReader.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSWriter.java
    M tests/native/org.eclipse.ice.reactor.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.cproject
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.project
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/FeatureSetTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridDataManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialBlockTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/PinAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/ReflectorAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/RingTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRComponentTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRCompositeTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRDataTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRPinTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRRodTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorIOHandlerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/.cproject
    R tests/native/org.eclipse.ice.reactor.sfr.test/.project
    R tests/native/org.eclipse.ice.reactor.sfr.test/CMakeLists.txt
    R tests/native/org.eclipse.ice.reactor.sfr.test/FeatureSetTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridDataManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialBlockTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/PinAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/ReflectorAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/RingTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRComponentTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRCompositeTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRDataTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRPinTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRRodTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorIOHandlerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorTester.cpp
    A tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/kvPair/test/CaebatKVPairBuilderTester.java
    A tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/kvPair/test/CaebatKVPairTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/launcher/test/CaebatLauncherBuilderTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/launcher/test/CaebatLauncherTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelBuilderTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelTester.java
    M tests/org.eclipse.ice.io.test/.classpath
    M tests/org.eclipse.ice.io.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSReaderTester.java
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSWriterTester.java
    M tests/org.eclipse.ice.persistence.xml.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into anna/postprocessing


  Commit: 3a504db70f7a8687a59bcfbb47d0796a7aec8442
      https://github.com/eclipse/ice/commit/3a504db70f7a8687a59bcfbb47d0796a7aec8442
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-04 (Wed, 04 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/Component.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/ListComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/componentVisitor/IComponentVisitor.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/ResourceComponent.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ResourceComponentTester.java

  Log Message:
  -----------
  Removed redundant code from ResourceComponent and its tester whose
functions are already covered by the super (equals, hashCode, copy,
etc.). Also cleaned up documentation in other classes.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: a14de454b0c6e3020e17feeac6d54b504d6fba95
      https://github.com/eclipse/ice/commit/a14de454b0c6e3020e17feeac6d54b504d6fba95
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-04 (Wed, 04 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/ResourceComponent.java

  Log Message:
  -----------
  Typo...

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: f53ed66733a8a89009720cd28897fd960ad67feb
      https://github.com/eclipse/ice/commit/f53ed66733a8a89009720cd28897fd960ad67feb
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-04 (Wed, 04 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/ResourceComponent.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/FormTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ListComponentTester.java

  Log Message:
  -----------
  Removed the jaxbSourceList member from ResourceComponent. Added some
tests to ListComponentTester that tests marshalling/unmarshalling with
ICEResources, fixed the FormTester test that couldn't unmarshal
ICEResources stored on ResourceComponents.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: bc261dd66ba256532de66354993c55e2d6504d7b
      https://github.com/eclipse/ice/commit/bc261dd66ba256532de66354993c55e2d6504d7b
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-02-04 (Wed, 04 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java

  Log Message:
  -----------
  Updating Caebat Launcher to allow for easier selecting of a custom KV
pair file.


  Commit: 35cbdf24ce83c48b5d9fbfb302018ad73c7ae495
      https://github.com/eclipse/ice/commit/35cbdf24ce83c48b5d9fbfb302018ad73c7ae495
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-02-04 (Wed, 04 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.io/.classpath
    M src/org.eclipse.ice.io/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.io.test/.classpath
    M tests/org.eclipse.ice.io.test/META-INF/MANIFEST.MF

  Log Message:
  -----------
  Merge branch 'andrew/caebat' of https://github.com/eclipse/ice.git into andrew/caebat


  Commit: ef29ba70ac45e7e14477d825a2d171de1b102a74
      https://github.com/eclipse/ice/commit/ef29ba70ac45e7e14477d825a2d171de1b102a74
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-05 (Thu, 05 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java

  Log Message:
  -----------
  MOOSE Model now has a ResourceComponent on it, and attempts to
automatically create and add a VizResource from the information provided
from the Mesh block when an imput file is imported.

Will still need to work out how to handle other cases, like if the user
creates a MOOSE Model from scratch, or if the mesh file isn't
immediately found in the workspace and they need to import it.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 53c1e592d4d22c10079b0008eca9195566121335
      https://github.com/eclipse/ice/commit/53c1e592d4d22c10079b0008eca9195566121335
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-05 (Thu, 05 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java

  Log Message:
  -----------
  Refactored the mesh finder function into its own method to avoid
redundancy.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: f7d860cfe733a53578c920b635db467196b81150
      https://github.com/eclipse/ice/commit/f7d860cfe733a53578c920b635db467196b81150
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-05 (Thu, 05 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/AllowedValueType.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/JobLauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/JobLauncherForm.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSELauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/utilities/moose/MOOSEFileHandler.java

  Log Message:
  -----------
  MOOSEModel now converts the Mesh block's "file" entry into a File Entry.

Also, moved the VizResource/Mesh detection stuff to reviewEntries(), as
reviewEntries() will always be called at least once before
building/editting a MOOSE tree, whether importing an Item or starting
from scratch.

Cleaned up/fixed documentation is other classes.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 9258f1cc953bf3e34615361f45b06a09136434a5
      https://github.com/eclipse/ice/commit/9258f1cc953bf3e34615361f45b06a09136434a5
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-02-05 (Thu, 05 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java

  Log Message:
  -----------
  Making the launch command take into account whether or not the user
wants to use a custom KV Pair file in the Caebat Launcher.


  Commit: 14bae0e00f68bd0a42203b74cc13c4c3db8e7bbf
      https://github.com/eclipse/ice/commit/14bae0e00f68bd0a42203b74cc13c4c3db8e7bbf
  Author: Taylor Patterson <pattersontc@xxxxxxxx>
  Date:   2015-02-06 (Fri, 06 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/visit/VisitPlotViewer.java

  Log Message:
  -----------
  Changing the default VisIt scalar plot type to pseudocolor rather than
contour since contour is applicable for a narrower range of data.


  Commit: 060870e6a737fc96e3b3f91bb44cf7d601c03aaa
      https://github.com/eclipse/ice/commit/060870e6a737fc96e3b3f91bb44cf7d601c03aaa
  Author: Taylor Patterson <pattersontc@xxxxxxxx>
  Date:   2015-02-06 (Fri, 06 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/action/JobLaunchAction.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/SuiteLauncher.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncher.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncherBuilder.java

  Log Message:
  -----------
  Minor edits to clean up some documentation/comments.


  Commit: 2265ffa20da95ae08c26ab1aa9c62c6d011be1b0
      https://github.com/eclipse/ice/commit/2265ffa20da95ae08c26ab1aa9c62c6d011be1b0
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-06 (Fri, 06 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/action/JobLaunchAction.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/SuiteLauncher.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncher.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncherBuilder.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/visit/VisitPlotViewer.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into anna/postprocessing


  Commit: ed6dff3db9e9bf3480e5da2a75e7f4c42e4683bb
      https://github.com/eclipse/ice/commit/ed6dff3db9e9bf3480e5da2a75e7f4c42e4683bb
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-02-06 (Fri, 06 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/.project
    M src/org.eclipse.ice.datastructures/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.datastructures/OSGI-INF/jaxbclassprovider.xml
    M src/org.eclipse.ice.datastructures/build.properties
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/Form.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFEntry.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/ICEJAXBClassProvider.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/IJAXBClassProvider.java
    M src/org.eclipse.ice.persistence.xml/OSGi-INF/xmlPersistenceProvider.xml
    M src/org.eclipse.ice.persistence.xml/src/org/eclipse/ice/persistence/xml/XMLPersistenceProvider.java
    M src/org.eclipse.ice.proteus/src/org/eclipse/ice/proteus/PROTEUSModel.java
    M tests/org.eclipse.ice.datastructures.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFTreeCompositeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/FormTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEJAXBClassProviderTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherFormTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherTester.java
    M tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java
    M tests/org.eclipse.ice.proteus.test/src/org/eclipse/ice/proteus/test/PROTEUSModelTester.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/mccaskey/xml_persistence_update'

Conflicts:
	tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java

Signed-off-by: Alex McCaskey <mccaskeyaj@xxxxxxxx>


  Commit: d2ec6607e526f9fb0ba666454d2d4dc20d6d60de
      https://github.com/eclipse/ice/commit/d2ec6607e526f9fb0ba666454d2d4dc20d6d60de
  Author: Alex McCaskey <mccaskeyaj@xxxxxxxx>
  Date:   2015-02-06 (Fri, 06 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/action/JobLaunchAction.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/SuiteLauncher.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncher.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncherBuilder.java

  Log Message:
  -----------
  Merge branch 'master' of https://github.com/eclipse/ice


  Commit: fd1482fff1adac76d63c40755efde77b98eeec07
      https://github.com/eclipse/ice/commit/fd1482fff1adac76d63c40755efde77b98eeec07
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-06 (Fri, 06 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/nuclear/MOOSEModelTester.java

  Log Message:
  -----------
  Fixed MOOSE Model unit tests.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 4302691597f2b671a3a52c931604329bdb9846a9
      https://github.com/eclipse/ice/commit/4302691597f2b671a3a52c931604329bdb9846a9
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-06 (Fri, 06 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/.project
    M src/org.eclipse.ice.datastructures/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.datastructures/OSGI-INF/jaxbclassprovider.xml
    M src/org.eclipse.ice.datastructures/build.properties
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/Form.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFEntry.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/ICEJAXBClassProvider.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/IJAXBClassProvider.java
    M src/org.eclipse.ice.persistence.xml/OSGi-INF/xmlPersistenceProvider.xml
    M src/org.eclipse.ice.persistence.xml/src/org/eclipse/ice/persistence/xml/XMLPersistenceProvider.java
    M src/org.eclipse.ice.proteus/src/org/eclipse/ice/proteus/PROTEUSModel.java
    M tests/org.eclipse.ice.datastructures.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFTreeCompositeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/FormTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEJAXBClassProviderTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherFormTester.java
    M tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java
    M tests/org.eclipse.ice.proteus.test/src/org/eclipse/ice/proteus/test/PROTEUSModelTester.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into anna/postprocessing

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: de8d05c338f4754a2d4d3fea1e8e28b0133200cc
      https://github.com/eclipse/ice/commit/de8d05c338f4754a2d4d3fea1e8e28b0133200cc
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-06 (Fri, 06 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/ICEJAXBClassProvider.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/FormTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEJAXBClassProviderTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherTester.java

  Log Message:
  -----------
  MOOSE Model now updates its ResourceComponent whenever the Mesh block's
"file" parameter is changed. If there is no "file" parameter to begin
with (which is the case when starting a MOOSE Model from scratch), it
will update the ResourceComponent following a save, and then
automatically update from that point onwards.

Also added ICEResource to the new JAXBClassProvider class list and
updated tests.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: b4db2c47979b4cbc0cce08be32bb99ce8101e7bb
      https://github.com/eclipse/ice/commit/b4db2c47979b4cbc0cce08be32bb99ce8101e7bb
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-09 (Mon, 09 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/JobLauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java

  Log Message:
  -----------
  Got the MOOSE Job Launcher plotting CSV results in the resources page
after a run. Still has some bugs to work out, but it's a start.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 0a827bb988965c3cc2e7705599ba0f4e03118e85
      https://github.com/eclipse/ice/commit/0a827bb988965c3cc2e7705599ba0f4e03118e85
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-02-09 (Mon, 09 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/.project
    M src/org.eclipse.ice.datastructures/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.datastructures/OSGI-INF/jaxbclassprovider.xml
    M src/org.eclipse.ice.datastructures/build.properties
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/Form.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFEntry.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/ICEJAXBClassProvider.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/IJAXBClassProvider.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/action/JobLaunchAction.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/SuiteLauncher.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncher.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncherBuilder.java
    M src/org.eclipse.ice.persistence.xml/OSGi-INF/xmlPersistenceProvider.xml
    M src/org.eclipse.ice.persistence.xml/src/org/eclipse/ice/persistence/xml/XMLPersistenceProvider.java
    M src/org.eclipse.ice.proteus/src/org/eclipse/ice/proteus/PROTEUSModel.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/visit/VisitPlotViewer.java
    M tests/org.eclipse.ice.datastructures.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFTreeCompositeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/FormTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEJAXBClassProviderTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherFormTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherTester.java
    M tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java
    M tests/org.eclipse.ice.proteus.test/src/org/eclipse/ice/proteus/test/PROTEUSModelTester.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into andrew/caebat


  Commit: 9a2d38e90857606b26683baa4be1a1248a9b9a46
      https://github.com/eclipse/ice/commit/9a2d38e90857606b26683baa4be1a1248a9b9a46
  Author: arbennett <bennettar@xxxxxxxx>
  Date:   2015-02-09 (Mon, 09 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java

  Log Message:
  -----------
  Updating CaebatLauncher to handle input files more reliably. 

Signed-off-by: arbennett <bennettar@xxxxxxxx>


  Commit: 6a2d222c72ec90ecc80ad217c156de68d7592740
      https://github.com/eclipse/ice/commit/6a2d222c72ec90ecc80ad217c156de68d7592740
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-10 (Tue, 10 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/master' into anna/postprocessing


  Commit: a80be5d498448e5b92b3f425232d10c3089cf82e
      https://github.com/eclipse/ice/commit/a80be5d498448e5b92b3f425232d10c3089cf82e
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-10 (Tue, 10 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets.moose/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/MOOSEFormEditor.java
    M src/org.eclipse.ice.viz.service.visit/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/connections/visit/VisItConnectionAdapter.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/ConnectionPreference.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPlot.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPreferenceInitializer.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPreferencePage.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItVizService.java
    M src/org.eclipse.ice.viz.service/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/AbstractVizPreferenceInitializer.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/AbstractVizPreferencePage.java
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/AbstractVizService.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/BasicVizServiceFactory.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/VizPreferenceInitializer.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/VizPreferencePage.java
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/connections/ConnectionAdapter.java
    A src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/connections/ConnectionState.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/preferences/CustomScopedPreferenceStore.java

  Log Message:
  -----------
  Added a flag to the Visualization Service preference page to enable
automatically connecting to default connections.

Added an AbstractVizService to include a getter for the preference
store.

Added a ConnectionAdapter class to manage interactions with connection
APIs (e.g., VisItSwtConnection and friends). The VisItVizService has its
own implementation of the adapter. The main purpose of the adapter is to
make the viz service code much easier to read. Have the adapter
separated will also be useful when the service allows client code to
have multiple viz connections to different hosts simultaneously.

Hooked up the table of connections to the VisItVizService preference
page. The VisItVizService now uses the default connection selected from
that table. If the default connection is changed, the associated
VisItPlots will attempt to reconnect. (I tested this out, and it worked
when switching the connection from remote to local!)

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: ddae487030a2a46cb35b50b76aa07c8f6048116a
      https://github.com/eclipse/ice/commit/ddae487030a2a46cb35b50b76aa07c8f6048116a
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-10 (Tue, 10 Feb 2015)

  Changed paths:
    A .project
    M CMakeLists.txt
    M examples/CMakeLists.txt
    M src/native/org.eclipse.ice.datastructures.native/CMakeLists.txt
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/Component.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/Composite.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/IComponentListener.h
    A src/native/org.eclipse.ice.datastructures.native/updateableComposite/IUpdateable.h
    M src/native/org.eclipse.ice.io.native/hdf/CMakeLists.txt
    M src/native/org.eclipse.ice.reactor.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/.cproject
    A src/native/org.eclipse.ice.reactor.sfr.native/.project
    A src/native/org.eclipse.ice.reactor.sfr.native/AssemblyType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/CMakeLists.txt
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/FeatureSet.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridDataManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/GridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/IGridManager.h
    A src/native/org.eclipse.ice.reactor.sfr.native/ISFRComponentVisitor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/Material.h
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/MaterialBlock.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComponent.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRComposite.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFRData.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactor.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorFactory.h
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/SFReactorIOHandler.h
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/UtilityOperations.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/PinType.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/ReflectorAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/Ring.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRAssembly.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRPin.h
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.cpp
    A src/native/org.eclipse.ice.reactor.sfr.native/assembly/SFRRod.h
    R src/native/org.eclipse.ice.reactor.sfr/.cproject
    R src/native/org.eclipse.ice.reactor.sfr/.project
    R src/native/org.eclipse.ice.reactor.sfr/AssemblyType.h
    R src/native/org.eclipse.ice.reactor.sfr/CMakeLists.txt
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.cpp
    R src/native/org.eclipse.ice.reactor.sfr/FeatureSet.h
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridDataManager.h
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.cpp
    R src/native/org.eclipse.ice.reactor.sfr/GridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/IGridManager.h
    R src/native/org.eclipse.ice.reactor.sfr/ISFRComponentVisitor.h
    R src/native/org.eclipse.ice.reactor.sfr/Material.cpp
    R src/native/org.eclipse.ice.reactor.sfr/Material.h
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.cpp
    R src/native/org.eclipse.ice.reactor.sfr/MaterialBlock.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComponent.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRComposite.h
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFRData.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactor.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorFactory.h
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.cpp
    R src/native/org.eclipse.ice.reactor.sfr/SFReactorIOHandler.h
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.cpp
    R src/native/org.eclipse.ice.reactor.sfr/UtilityOperations.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/PinType.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/ReflectorAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/Ring.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRAssembly.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRPin.h
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.cpp
    R src/native/org.eclipse.ice.reactor.sfr/assembly/SFRRod.h
    M src/native/org.eclipse.ice.updater/CMakeLists.txt
    R src/native/org.eclipse.ice.updater/Doxyfile.in
    R src/native/org.eclipse.ice.updater/UseDoxygen.cmake
    A src/org.eclipse.ice.caebat/CaebatModel/example_input_keyvalue
    M src/org.eclipse.ice.caebat/OSGi-INF/caebatKVPairComponent.xml
    M src/org.eclipse.ice.caebat/build.properties
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairBuilder.java
    R src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CAEBATKVPairItem.java
    A src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CaebatKVPair.java
    A src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/kvPair/CaebatKVPairBuilder.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/model/CaebatModel.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.datastructures/.project
    M src/org.eclipse.ice.datastructures/META-INF/MANIFEST.MF
    A src/org.eclipse.ice.datastructures/OSGI-INF/jaxbclassprovider.xml
    M src/org.eclipse.ice.datastructures/build.properties
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/Component.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/ListComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/componentVisitor/IComponentVisitor.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/AllowedValueType.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/Form.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/ResourceComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFEntry.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/form/emf/EMFTreeComposite.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/ICEJAXBClassProvider.java
    A src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/IJAXBClassProvider.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/resource/ICEResource.java
    M src/org.eclipse.ice.io/.classpath
    M src/org.eclipse.ice.io/META-INF/MANIFEST.MF
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSReader.java
    M src/org.eclipse.ice.io/src/org/eclipse/ice/io/ips/IPSWriter.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/action/JobLaunchAction.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/JobLauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/JobLauncherForm.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/jobLauncher/SuiteLauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSELauncher.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/utilities/moose/MOOSEFileHandler.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncher.java
    M src/org.eclipse.ice.nek5000/src/org/eclipse/ice/nek5000/NekLauncherBuilder.java
    M src/org.eclipse.ice.persistence.xml/OSGi-INF/xmlPersistenceProvider.xml
    M src/org.eclipse.ice.persistence.xml/src/org/eclipse/ice/persistence/xml/XMLPersistenceProvider.java
    M src/org.eclipse.ice.proteus/src/org/eclipse/ice/proteus/PROTEUSModel.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/visit/VisitPlotViewer.java
    M tests/native/org.eclipse.ice.reactor.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.cproject
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/.project
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/CMakeLists.txt
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/FeatureSetTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridDataManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/GridManagerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialBlockTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/MaterialTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/PinAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/ReflectorAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/RingTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRAssemblyTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRComponentTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRCompositeTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRDataTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRPinTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFRRodTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorIOHandlerTester.cpp
    A tests/native/org.eclipse.ice.reactor.sfr.native.test/SFReactorTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/.cproject
    R tests/native/org.eclipse.ice.reactor.sfr.test/.project
    R tests/native/org.eclipse.ice.reactor.sfr.test/CMakeLists.txt
    R tests/native/org.eclipse.ice.reactor.sfr.test/FeatureSetTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridDataManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/GridManagerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialBlockTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/MaterialTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/PinAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/ReflectorAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/RingTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRAssemblyTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRComponentTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRCompositeTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRDataTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRPinTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFRRodTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorIOHandlerTester.cpp
    R tests/native/org.eclipse.ice.reactor.sfr.test/SFReactorTester.cpp
    A tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/kvPair/test/CaebatKVPairBuilderTester.java
    A tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/kvPair/test/CaebatKVPairTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/launcher/test/CaebatLauncherBuilderTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/launcher/test/CaebatLauncherTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelBuilderTester.java
    M tests/org.eclipse.ice.caebat.test/src/org/eclipse/ice/caebat/model/test/CaebatModelTester.java
    M tests/org.eclipse.ice.datastructures.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/EMFTreeCompositeTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/FormTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ICEJAXBClassProviderTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ListComponentTester.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ResourceComponentTester.java
    M tests/org.eclipse.ice.io.test/.classpath
    M tests/org.eclipse.ice.io.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSReaderTester.java
    M tests/org.eclipse.ice.io.test/src/org/eclipse/ice/io/ips/test/IPSWriterTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/ItemTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherFormTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/JobLauncherTester.java
    M tests/org.eclipse.ice.item.test/src/org/eclipse/ice/item/test/nuclear/MOOSEModelTester.java
    M tests/org.eclipse.ice.persistence.xml.test/META-INF/MANIFEST.MF
    M tests/org.eclipse.ice.persistence.xml.test/src/xmlpp/test/XMLPersistenceProviderTester.java
    M tests/org.eclipse.ice.proteus.test/src/org/eclipse/ice/proteus/test/PROTEUSModelTester.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/anna/postprocessing' into
jordan/VisItVisService

Conflicts:
	src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/componentVisitor/IComponentVisitor.java

Merging Anna's post-processing work into the VisItVizService branch. 

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: e37972908580e1f3e198345c608f416141b4e12e
      https://github.com/eclipse/ice/commit/e37972908580e1f3e198345c608f416141b4e12e
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-10 (Tue, 10 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/componentVisitor/SelectiveComponentVisitor.java

  Log Message:
  -----------
  Added a question mark. Generic types need to be specified or have
questions marks in the type is unknown, otherwise the JVM complains.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 6cc95794693ccfe86aad417c688b2eb18451dfbc
      https://github.com/eclipse/ice/commit/6cc95794693ccfe86aad417c688b2eb18451dfbc
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-10 (Tue, 10 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVVizService.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVDataLoader.java

  Log Message:
  -----------
  ICEResourcePage now listens to updates from its ResourceComponent. When
new resources are added to the ResourceComponent, it looks for any new
VizResources that aren't on the ICEResourcePage.plotMap and adds them.
This is opposed to initializing IPlot objects at... plot-time, which was
encountering threading issues, as CSVPlot.load() executes in its own
thread and wasn't completing in time.

Still has some bugs. Sometimes throws a widget predisposed error when
attemping to draw. Also, it does not plot when re-opening a closed MOOSE
Launcher.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 52b561e61e70261a396b7d308d021edaa8896ef0
      https://github.com/eclipse/ice/commit/52b561e61e70261a396b7d308d021edaa8896ef0
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-11 (Wed, 11 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/ListComponent.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/ICEObject/WrappedGlazedEventListener.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ListComponentTester.java
    A tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/TestListComponentListener.java

  Log Message:
  -----------
  Adding hooks to register glazed list listeners to ListComponents. The
IUpdateableListeners work as well, but if client code wants more detail
about what changed, a ListEventListener can be registered. Note that
these ListEventListeners are not notified when the ListComponent's ID
info is updated.

Added test code to handle this.

Added types to a lot of places where raw types were used previously.
Most of those are internal to ListComponent or in the tests. 

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 1aa198eaa36c9113fd22a19394b968e6f726b208
      https://github.com/eclipse/ice/commit/1aa198eaa36c9113fd22a19394b968e6f726b208
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-11 (Wed, 11 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/MOOSEFormEditor.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPlot.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItVizService.java

  Log Message:
  -----------
  Added code to register a listener with the MOOSE Model's
ResourceComponent (which contains the mesh). If the ResourceComponent is
updated with a new mesh file, the plot is updated to use the mesh file.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 1888d26743d3b399f5f1027468ce473de457d192
      https://github.com/eclipse/ice/commit/1888d26743d3b399f5f1027468ce473de457d192
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-12 (Thu, 12 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVPlot.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVVizService.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVDataLoader.java

  Log Message:
  -----------
  Added a CSVPlot.hasValidProvider() method which checks if the plot has a
non-null data provider. This is necessary for CSV files which aren't in
an (m x n) format and can't be plotted (e.g. BISON axial peaking
factors). Also cleaned up some documentation in related classes.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 785074808b72d3469579042a2e68d2531e9ddc56
      https://github.com/eclipse/ice/commit/785074808b72d3469579042a2e68d2531e9ddc56
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-12 (Thu, 12 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEFormEditor.java

  Log Message:
  -----------
  Removed a line where the ICEFormEditor was printing just a number with
no other info (probably left over from debugging something).

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 28311a339a2158f04b0df35073a7cee75892328b
      https://github.com/eclipse/ice/commit/28311a339a2158f04b0df35073a7cee75892328b
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-12 (Thu, 12 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVVizService.java

  Log Message:
  -----------
  Was able to finally fix the widget disposed error I was getting when
trying to plot files. 

When a ICEResourcePage was closed and it disposed of its widgets, the
page wasn't removed from the workbench's SelectionService listeners. So
everytime the SelectionService updated its listeners at a later point
(like when another MOOSE Launcher tried to plot files), it also
attempted to update the old ICEResourcePages with disposed widgets,
causing the error.

I added a DisposeListener onto the ICEResourcePage's main composite, so
when it's the composite's time to go, the ICEResourcePage is also
unregistered to get updates from the SelectionService.

Fixes bug 459707.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: e15cf3d6e25504f4fb699e015513c9a2322315eb
      https://github.com/eclipse/ice/commit/e15cf3d6e25504f4fb699e015513c9a2322315eb
  Author: jdeyton <jordan.deyton@xxxxxxxxx>
  Date:   2015-02-16 (Mon, 16 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPlot.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPreferencePage.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItVizService.java

  Log Message:
  -----------
  Pushed a commit that addresses bugs 460033, 460034, and 460035. All of
these were cause by the viz service attempting to connect to an invalid
default connection. 

Now, if the default connection is not configured, the VisItPlot updates
itself accordingly and the viz service does not attempt to connect to
it. 

I also added code to the VisItPreferencePage to notify the viz service
of removed, changed, and added connections. Although it turns out this
code is not necessary to fix the aforementioned bugs, it will come in
handy when we have multiple connections open simultaneously.

Signed-off-by: jdeyton <jordan.deyton@xxxxxxxxx>


  Commit: 2c76b2f7635666958cde77000c4b7dd5f4750dd7
      https://github.com/eclipse/ice/commit/2c76b2f7635666958cde77000c4b7dd5f4750dd7
  Author: jdeyton <jordan.deyton@xxxxxxxxx>
  Date:   2015-02-16 (Mon, 16 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPlot.java

  Log Message:
  -----------
  Added code to show a message if the plot's associated URI is null. This
fixes bug 460033.

Signed-off-by: jdeyton <jordan.deyton@xxxxxxxxx>


  Commit: a1d01c81e30b9d00502409a4040209fa43b035ab
      https://github.com/eclipse/ice/commit/a1d01c81e30b9d00502409a4040209fa43b035ab
  Author: jdeyton <jordan.deyton@xxxxxxxxx>
  Date:   2015-02-17 (Tue, 17 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/MOOSETreeCompositeView.java

  Log Message:
  -----------
  Fixed two bugs in the MOOSE Tree View that caused unnecessary updates to
the MOOSE Model.

The first unnecessary update could occur if the active MOOSE Model
Builder is deactivated then activated by clicking on other views in the
workbench. I added a check to the IPartListener2 to only update if the
activated MOOSE Model Builder is a new one.

The second unnecessary update could occur if the same value was selected
from the MOOSE app Combo in the MOOSE Tree View. This was fixed by
adding a little logic to do nothing when the  Combo's value does not
actually change.

Signed-off-by: jdeyton <jordan.deyton@xxxxxxxxx>


  Commit: 0a084e418496094fc35e4c20522e55e749fcfcb2
      https://github.com/eclipse/ice/commit/0a084e418496094fc35e4c20522e55e749fcfcb2
  Author: jdeyton <jordan.deyton@xxxxxxxxx>
  Date:   2015-02-17 (Tue, 17 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets.moose/src/org/eclipse/ice/client/widgets/moose/MOOSEFormEditor.java

  Log Message:
  -----------
  Fixed some bugs with the MOOSE Model Builder. Specifically, it did not
set the plot, so changes to the mesh ResourceComponent and file Entry
did not properly update the mesh plot.

This partially fixes bug 460125.

Signed-off-by: jdeyton <jordan.deyton@xxxxxxxxx>


  Commit: b5d5534aae05fe5bf826fd31720b898048a6035c
      https://github.com/eclipse/ice/commit/b5d5534aae05fe5bf826fd31720b898048a6035c
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-17 (Tue, 17 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/viz/service/IPlot.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPlot.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVPlot.java

  Log Message:
  -----------
  Removed the CSVPlot.hasValidProvider() method, and instead added a
method to the IPlot interface called isValidPlot() that returns a
boolean. It will be up to each implementation to discern what is/isn't
valid plotting data. This is necessary because it's still possible to
have a valid IPlot object, but have invalid data loaded into it.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 5a92dbd0d864789a030a1316e149c43854fb372a
      https://github.com/eclipse/ice/commit/5a92dbd0d864789a030a1316e149c43854fb372a
  Author: jdeyton <jordan.deyton@xxxxxxxxx>
  Date:   2015-02-17 (Tue, 17 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java

  Log Message:
  -----------
  Added some logic to the MOOSE Model's private method
updateMeshResource() to remove the mesh file resource when the mesh file
Entry is updated to an invalid value.

Moved the code that finds the Mesh block in createMeshResource() to a
new method, since we might need to re-use it later.

Auto-formatted the code, hence the various other changes on lines
scattered throughout the file.

Signed-off-by: jdeyton <jordan.deyton@xxxxxxxxx>


  Commit: 5362b8192b607ebdeb28eeb89470ea18b55c04f6
      https://github.com/eclipse/ice/commit/5362b8192b607ebdeb28eeb89470ea18b55c04f6
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-20 (Fri, 20 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/viz/service/IPlot.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPlot.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVPlot.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVVizService.java

  Log Message:
  -----------
  Removed isValidPlot() from the IPlot interface and implementations.
Added a custom UncaughtExceptionHandler to the CSVPlot.load() method to
try to pass exceptions to the parent thread as part of catching bad
plots.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: 520a72b91eaec8e025a6ca297a79460081176293
      https://github.com/eclipse/ice/commit/520a72b91eaec8e025a6ca297a79460081176293
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-20 (Fri, 20 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Rewrote parts of the ICEResourcePage to handle drawing plots only when
possible. Plots are created/loaded when the ResourceComponent is set or
updated, but drawn only when selected the first time. After being drawn
once, a plot doesn't need to be drawn again.

Changed the plots to not "tile". The selected resource in the Resource
View will be rendered alone. We can revisit tiling later after we come
up with a good way to be able to remove them (or put them into separate
Plot Editors).

>From what I can tell, when a plot is invalid, it is caught either at
create time or at draw time. If a plot cannot be created or drawn, the
resource is sent to the browser.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 9e29511a8ac48f042819941ff396cdac38b239c9
      https://github.com/eclipse/ice/commit/9e29511a8ac48f042819941ff396cdac38b239c9
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-20 (Fri, 20 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/ICEJAXBClassProvider.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ListComponentTester.java

  Log Message:
  -----------
  I was pretty certain I had added VizResource to the ICEJAXBClassProvider
class list, but I guess I'm just tripping so here it is. Also added to
the ListComponentTester to make sure it handles mixed lists of
ICEResources and VizResources correctly. Fixes bug 459684.

Signed-off-by: Anna Wojtowicz <wojtowicza@xxxxxxxx>


  Commit: fd661ee51b9628223ad965576d5ca0960a50de8a
      https://github.com/eclipse/ice/commit/fd661ee51b9628223ad965576d5ca0960a50de8a
  Author: Anna Wojtowicz <wojtowicza@xxxxxxxx>
  Date:   2015-02-20 (Fri, 20 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Merge branch 'anna/postprocessing' of https://github.com/eclipse/ice into anna/postprocessing


  Commit: bd317b417a7c6b05e8aaf4aeb7fc7717ecc025be
      https://github.com/eclipse/ice/commit/bd317b417a7c6b05e8aaf4aeb7fc7717ecc025be
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-20 (Fri, 20 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Changed the ICEResourceView to use the SelectiveComponentVisitor since
there was only one visit operation used. This eliminates almost 100
lines of code.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 12d63b699f5f990d83e70512129e538f18655e34
      https://github.com/eclipse/ice/commit/12d63b699f5f990d83e70512129e538f18655e34
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-20 (Fri, 20 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Simplified some of the code that listened for the current ICEFormEditor.
Added some extra documentation.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 9d3048654a5e633972088edc7711b9ed1447e2d8
      https://github.com/eclipse/ice/commit/9d3048654a5e633972088edc7711b9ed1447e2d8
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-20 (Fri, 20 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/ICEJAXBClassProvider.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ListComponentTester.java

  Log Message:
  -----------
  Merge branch 'anna/postprocessing' of https://github.com/eclipse/ice into anna/postprocessing


  Commit: 14657cadad09ef52cf6187989e54e6b11ecbbe67
      https://github.com/eclipse/ice/commit/14657cadad09ef52cf6187989e54e6b11ecbbe67
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-23 (Mon, 23 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Updated the ICEResourceView to populate based on the currently active
ICEFormEditor when its content is created for the first time.

Cleaned up some of the view's code for updating based on the current
ICEFormEditor and removed an unnecessary public method.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 394955c4c8421c4d33321f63b9f44de7fe93d6f3
      https://github.com/eclipse/ice/commit/394955c4c8421c4d33321f63b9f44de7fe93d6f3
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-23 (Mon, 23 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Relocated some code from the ICEResourcePage that belongs in the
ICEResourceView.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: bed3fdd431f3d92be5e38fbb90e7f2b09abfbb05
      https://github.com/eclipse/ice/commit/bed3fdd431f3d92be5e38fbb90e7f2b09abfbb05
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-23 (Mon, 23 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.caebat/src/org/eclipse/ice/caebat/launcher/CaebatLauncher.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEFormEditor.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourcePage.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/viz/service/IPlot.java
    M src/org.eclipse.ice.datastructures/src/org/eclipse/ice/datastructures/jaxbclassprovider/ICEJAXBClassProvider.java
    M src/org.eclipse.ice.item/src/org/eclipse/ice/item/nuclear/MOOSEModel.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVPlot.java
    M src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVVizService.java
    M src/org.eclipse.ice.viz/src/org/eclipse/ice/viz/plotviewer/CSVDataLoader.java
    M tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ListComponentTester.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/anna/postprocessing' into
jordan/VisItVisService

Conflicts:
	src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPlot.java
	src/org.eclipse.ice.viz.service/src/org/eclipse/ice/viz/service/csv/CSVVizService.java
	tests/org.eclipse.ice.datastructures.test/src/org/eclipse/ice/datastructures/test/ListComponentTester.java

Merging Anna's post-processing branch into the VisItVizService branch.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 95588a7e23227a51ed0a28973577bc8a5e2ad12c
      https://github.com/eclipse/ice/commit/95588a7e23227a51ed0a28973577bc8a5e2ad12c
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-23 (Mon, 23 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Fixed a possible index out of bounds exception.
Removed an unnecessary cast that was generating a warning.
Removed a TODO flag.
Organized the imports.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 23565f062a50365fa0ec1362bfc37f4c4ebacf58
      https://github.com/eclipse/ice/commit/23565f062a50365fa0ec1362bfc37f4c4ebacf58
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-23 (Mon, 23 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/anna/postprocessing' into jordan/VisItVisService


  Commit: 4243e782155d2999148da630cce1e14282b5b9a3
      https://github.com/eclipse/ice/commit/4243e782155d2999148da630cce1e14282b5b9a3
  Author: Jordan Deyton <deytonjh@xxxxxxxx>
  Date:   2015-02-23 (Mon, 23 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItPlot.java
    M src/org.eclipse.ice.viz.service.visit/src/org/eclipse/ice/viz/service/visit/VisItVizService.java

  Log Message:
  -----------
  Updated the VisItVizService to return a null plot if it cannot open the
specified file and find plottable features.

Signed-off-by: Jordan Deyton <deytonjh@xxxxxxxx>


  Commit: 3a3634136482992a3b5faf5b6302a41e06b82641
      https://github.com/eclipse/ice/commit/3a3634136482992a3b5faf5b6302a41e06b82641
  Author: Jordan <jordan.deyton@xxxxxxxxx>
  Date:   2015-02-24 (Tue, 24 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Fixing an NPE bug introduced with one of my recent commits.

Signed-off-by: Jordan <jordan.deyton@xxxxxxxxx>


  Commit: 860c621e6aff0303a655817953e62d86f08f8fa6
      https://github.com/eclipse/ice/commit/860c621e6aff0303a655817953e62d86f08f8fa6
  Author: Jordan <jordan.deyton@xxxxxxxxx>
  Date:   2015-02-24 (Tue, 24 Feb 2015)

  Changed paths:
    M src/org.eclipse.ice.client.widgets/src/org/eclipse/ice/client/widgets/ICEResourceView.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/anna/postprocessing' into jordan/VisItVisService


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