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Re: Document instance returned from retrieveDocumentSet() has incomplete data [message #39341 is a reply to message #39310] |
Thu, 27 December 2007 21:57 ![Go to previous message Go to previous message](theme/Solstice/images/up.png) ![Go to next message Go to next message](theme/Solstice/images/down.png) |
Matthew Davis![Friend of Eclipse Friend](/donate/web-api/friends_decorator.php?email=mattadav%40us.ibm.com) Messages: 269 Registered: July 2009 |
Senior Member |
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Hmmm, weird. Ok, here's a couple thoughts/ideas:
1) We haven't tested OHF with Java 6 at all - it is "unsupported".
However, I can't imagine what you're describing being caused by Java 6
(we've seen other errors, but not incomplete buffers). If you have a
Java 5 JRE sitting around, if you could try it there and see what
happens, that may fix it immediately and we'll have to look at Java 6
support shortly.
2) Could you look at the length of the byte array and let us know how
much is being received. The length I'm seeing is 9570 (trying to
determine if there is some buffering issue, showing a cutoff at 1024
bytes or something).
Thanks,
-Matt
Sumedh wrote:
> Hey Matt,
>
> Nope, no exceptions/errors whatsoever in the Console. The status comes
> back as a 'Success'. Even the public ATNA syslogs look good. The byte
> array is just not complete for that document.
>
> If its of any help, my document consumer is on a Windows XP box with
> Java 1.6.0_03 and using the IHE components as of Dec 19th.
>
> Any ideas?
>
> Thanks,
> Sumedh
>
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Re: Document instance returned from retrieveDocumentSet() has incomplete data [message #40018 is a reply to message #39802] |
Tue, 08 January 2008 20:10 ![Go to previous message Go to previous message](theme/Solstice/images/up.png) |
Matthew Davis![Friend of Eclipse Friend](/donate/web-api/friends_decorator.php?email=mattadav%40us.ibm.com) Messages: 269 Registered: July 2009 |
Senior Member |
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Hi Sumedh,
I am running a new OHF build right now (will be out shortly) that adds
additional debug info into the document buffering in
retrieveDocumentSet. Hopefully this will allow us to pinpoint where the
data loss is happening. I have yet to reproduce the problem in Java 6,
so I'm still guessing here and hoping for the best.
There will be two spots where the document size is printed. Once is
immediately after the document extraction in B_XDSSoapClient, with a
line looking like this:
[DEBUG][B_XDSSoapClient.java:174] Extracted attachment with id
1.2.3.4.100000022002209036.1196211173506.1 from repository
1.19.6.24.109.42.1 with size 9570.
The other is at the end of processing, after all document retrieves have
been buffered. This is after OHF is finished touching the documents and
no other changes happen before the return to the caller. It will look
something like this:
[DEBUG][B_Consumer.java:502] Received 1 documents in total
[DEBUG][B_Consumer.java:507] - Document #1
[ID=1.2.3.4.100000022002209036.1196211173506.1, REP=1.19.6.24.109.42.1,
SIZE=9570]
Please try running this again and post the results of your log. If the
value is incorrect on the first log message, I will know where to begin
to look. If it's different between the first and second log message,
I'll be a little more puzzled but will also have other places to look.
Thank you,
-Matt
Matthew Davis wrote:
> OK, thanks for the log. The "SOAP RESPONSE BODY" being printed out
> shows a complete document being there at that phase - aka the document
> is being received in full and relayed by Axis to OHF - so the problem is
> probably in the deserialization. I'm going to try a couple more things
> this morning and get back to you.
>
> In the meantime, could you please try the same transaction on the
> following repository endpoint:
> http://129.6.24.109:9080/axis2/services/xdsrepositorybopt
> I don't think it'll make any difference, but it wouldn't hurt to try.
>
> Thanks a bunch,
> -Matt
>
>
> Sumedh wrote:
>> Here you go:
>>
>> DEBUG - Begin Document Retrieve.
>> WARN - Defaulting to IP Address for AuditSourceID. This should be set
>> by calling setAuditSourceId.
>> DEBUG - Starting Audit start messages [1]
>> DEBUG - Sending ActorStartStopMessage Audit message.
>> INFO - <13>Jan 4 02:25:03 machine1 <?xml version="1.0"
>> encoding="ASCII"?><AuditMessage
>> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
>> xsi:noNamespaceSchemaLocation="healthcare-security-audit.xsd ">
>> <EventIdentification EventActionCode="E"
>> EventDateTime="2008-01-04T02:25:03.312-05:00" EventOutcomeIndicator="0">
>> <EventID code="110100" codeSystemName="DCM" displayName="Application
>> Activity"/>
>> <EventTypeCode code="110120" codeSystemName="DCM"
>> displayName="Application Start"/>
>> </EventIdentification>
>> <ActiveParticipant UserID="OHF_XDS_B_CONSUMER" UserIsRequestor="false">
>> <RoleIDCode code="110150" codeSystemName="DCM"
>> displayName="Application"/>
>> </ActiveParticipant>
>> <ActiveParticipant UserID="XdsTester" UserIsRequestor="true">
>> <RoleIDCode code="110151" codeSystemName="DCM"
>> displayName="Application Launcher"/>
>> </ActiveParticipant>
>> <AuditSourceIdentification AuditSourceID="192.168.1.100"/>
>> </AuditMessage>
>>
>> DEBUG - sending 1 document requests to:
>> http://129.6.24.109:9080/axis2/services/xdsrepositoryb
>> log4j:WARN No appenders could be found for logger
>> (org.apache.axis2.util.Loader).
>> log4j:WARN Please initialize the log4j system properly.
>> DEBUG - Beginning XDS SOAP Send
>> DEBUG - ****** SOAP REQUEST BODY ******
>> DEBUG - <retrieve:RetrieveDocumentSetRequest
>> xmlns:retrieve="urn:ihe:iti:xds-b:2007"><retrieve:DocumentRequest ><retrieve:RepositoryUniqueId>1.19.6.24.109.42.1</retrieve:RepositoryUniqueId ><retrieve:DocumentUniqueId>1.2.3.4.100000022002209036.1196211173506.1 </retrieve:DocumentUniqueId></retrieve:DocumentRequest></retrieve:RetrieveDocumentSetRequest >
>>
>> DEBUG - ********************************
>> DEBUG - SOAP Envelope Set
>> DEBUG - Initializing ATNA ConfigurationManager
>> DEBUG - Received SOAP Response
>> DEBUG - ****** SOAP RESPONSE BODY ******
>> DEBUG - <xdsb:RetrieveDocumentSetResponse
>> xmlns:xdsb="urn:ihe:iti:xds-b:2007"><rs:RegistryResponse
>> xmlns:rs="urn:oasis:names:tc:ebxml-regrep:xsd:rs:3.0"
>> status="urn:oasis:names:tc:ebxml-regrep:ResponseStatusType:Success "></rs:RegistryResponse><xdsb:DocumentResponse><xdsb:Document > PCEtLSANCi8qKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioq KioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqDQog KiBDb3B5cmlnaHQgKGMpIDIwMDYgSUJNIENvcnBvcmF0aW9uIGFuZCBvdGhl cnMuDQogKiBBbGwgcmlnaHRzIHJlc2VydmVkLiBUaGlzIHByb2dyYW0gYW5k IHRoZSBhY2NvbXBhbnlpbmcgbWF0ZXJpYWxzDQogKiBhcmUgbWFkZSBhdmFp bGFibGUgdW5kZXIgdGhlIHRlcm1zIG9mIHRoZSBFY2xpcHNlIFB1YmxpYyBM aWNlbnNlIHYxLjANCiAqIHdoaWNoIGFjY29tcGFuaWVzIHRoaXMgZGlzdHJp YnV0aW9uLCBhbmQgaXMgYXZhaWxhYmxlIGF0DQogKiBodHRwOi8vd3d3LmVj bGlwc2Uub3JnL2xlZ2FsL2VwbC12MTAuaHRtbA0KICoNCiAqIENvbnRyaWJ1 dG9yczoNCiAqICAgICBJQk0gQ29ycG9yYXRpb24gLSBpbml0aWFsIEFQSSBh bmQgaW1wbGVtZW50YXRpb24NCiAqKioqKioqKioqKioqKioqKioqKioqKioq KioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioq KioqKioqKioqLw0KIC0tPg0KIDxDbGluaWNhbERvY3VtZW50IHhtbG5zPSJ1 cm46aGw3LW9yZzp2MyIgIHhtbG5zOnhzaT0iaHR0cDovL3d3dy53My5vcmcv MjAwMS9YTUxTY2hlbW
E
>>
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>
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> GtkbWx3YzF3b2Exd3BJRFV1T1RWaElFTnZjSGx5YVdkb2RDQXlNREExDQpJR kpoWkdsallXd2dSWGxsSUZOdlpuUjNZWEpsS1FvdlZHbDBiR1VvVTJOaGJsT mhiWEJzWlM1a2Rta3BQajVsYm1Sdg0KWW1vS2VISmxaZ293SURFekNqQXdNR EF3TURBd01EQWdOalUxTXpVZ1ppQUtNREF3TURBd01EVXlOQ0F3TURBd01DQ nUNCklBb3dNREF3TURBeU9ERTJJREF3TURBd0lHNGdDakF3TURBd01EQTBOa lVnTURBd01EQWdiaUFLTURBd01EQXdNRE13DQpOU0F3TURBd01DQnVJQW93T URBd01EQXdNREUxSURBd01EQXdJRzRnQ2pBd01EQXdNREF5T0RZZ01EQXdNR EFnYmlBSw0KTURBd01EQXdNRFUzTWlBd01EQXdNQ0J1SUFvd01EQXdNREF3T 1RnNElEQXdNREF3SUc0Z0NqQXdNREF3TURBMk56TWcNCk1EQXdNREFnYmlBS 01EQXdNREF3TURZeE15QXdNREF3TUNCdUlBb3dNREF3TURBd05qUXpJREF3T URBd0lHNGdDakF3DQpNREF3TURFeU1qa2dNREF3TURBZ2JpQUtkSEpoYVd4b GNnbzhQQ0F2VTJsNlpTQXhNeUF2VW05dmRDQXhJREFnVWlBdg0KU1c1bWJ5Q XlJREFnVWdvdlNVUWdXenhHTkVORE4wRkZRalUwUWpNMlJrSXlPRE5ETlVNe k1qUTNPVUZFTWpnelJqNDgNClJqUkRRemRCUlVJMU5FSXpOa1pDTWpnelF6V kRNekkwTnpsQlJESTRNMFkrWFFvK1BncHpkR0Z5ZEhoeVpXWUtNekF4DQpNZ 29sSlVWUFJnbz0NCiAgICAgIDwvdGV4dD4NCiAgICA8L25vblhNTEJvZHk+D QogIDwvY29tcG9uZW50Pg0KPC9D
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>
> uaWNhbERvY3VtZW50Pg0K</xdsb:Document><xdsb:RepositoryUniqueId >1.19.6.24.109.42.1</xdsb:RepositoryUniqueId><xdsb:DocumentUniqueId >1.2.3.4.100000022002209036.1196211173506.1</xdsb:DocumentUniqueId ><xdsb:mimeType>text/xml</xdsb:mimeType></xdsb:DocumentResponse ></xdsb:RetrieveDocumentSetResponse>
>
>>
>> DEBUG - ********************************
>> DEBUG - Beginning XDS.b MTOM attachment extraction
>> DEBUG - Extracted attachment with id
>> 1.2.3.4.100000022002209036.1196211173506.1 from repository
>> 1.19.6.24.109.42.1
>> DEBUG - Ending XDS.b MTOM attachment extraction
>> DEBUG - Ending XDS SOAP Processing
>> DEBUG - Loading response in EMF.
>> DEBUG - Success.
>> DEBUG - RegistryResponse error list is null.
>> WARN - Defaulting to IP Address for AuditSourceID. This should be set
>> by calling setAuditSourceId.
>> DEBUG - Sending PHIImportEvent Audit message.
>> INFO - <13>Jan 4 02:25:06 machine1 <?xml version="1.0"
>> encoding="ASCII"?><AuditMessage
>> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
>> xsi:noNamespaceSchemaLocation="healthcare-security-audit.xsd ">
>> <EventIdentification EventActionCode="R"
>> EventDateTime="2008-01-04T02:25:06.468-05:00" EventOutcomeIndicator="0">
>> <EventTypeCode code="ITI-43" codeSystemName="IHE Transactions"
>> displayName="Retrieve Document Set"/>
>> <EventID code="110107" codeSystemName="DCM" displayName="Import"/>
>> </EventIdentification>
>> <ActiveParticipant
>> UserID="http://129.6.24.109:9080/axis2/services/xdsrepositoryb"
>> UserIsRequestor="false">
>> <RoleIDCode code="110152" codeSystemName="DCM"
>> displayName="Destination"/>
>> </ActiveParticipant>
>> <ActiveParticipant UserID="XdsTester" UserIsRequestor="true">
>> <RoleIDCode code="110153" codeSystemName="DCM" displayName="Source"/>
>> </ActiveParticipant>
>> <AuditSourceIdentification AuditSourceID="192.168.1.100"/>
>> <ParticipantObjectIdentification
>> ParticipantObjectID=" 270a59d7a8b145b^^^&1.3.6.1.4.1.21367.2005.3.7&am p;ISO "
>> ParticipantObjectTypeCode="1" ParticipantObjectTypeCodeRole="1">
>> <ParticipantObjectIDTypeCode code="2"/>
>> </ParticipantObjectIdentification>
>> <ParticipantObjectIdentification
>> ParticipantObjectID="1.2.3.4.100000022002209036.1196211173506.1 "
>> ParticipantObjectTypeCode="2" ParticipantObjectTypeCodeRole="3">
>> <ParticipantObjectIDTypeCode code="9"/>
>> </ParticipantObjectIdentification>
>> </AuditMessage>
>>
>> DEBUG - Now have recieved 1 documents.
>> WARN - Defaulting to IP Address for AuditSourceID. This should be set
>> by calling setAuditSourceId.
>> DEBUG - Starting Audit stop messages [1]
>> DEBUG - Sending ActorStartStopMessage Audit message.
>> INFO - <13>Jan 4 02:25:06 machine1 <?xml version="1.0"
>> encoding="ASCII"?><AuditMessage
>> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
>> xsi:noNamespaceSchemaLocation="healthcare-security-audit.xsd ">
>> <EventIdentification EventActionCode="E"
>> EventDateTime="2008-01-04T02:25:06.500-05:00" EventOutcomeIndicator="0">
>> <EventID code="110100" codeSystemName="DCM" displayName="Application
>> Activity"/>
>> <EventTypeCode code="110121" codeSystemName="DCM"
>> displayName="Application Stop"/>
>> </EventIdentification>
>> <ActiveParticipant UserID="OHF_XDS_B_CONSUMER" UserIsRequestor="false">
>> <RoleIDCode code="110150" codeSystemName="DCM"
>> displayName="Application"/>
>> </ActiveParticipant>
>> <ActiveParticipant UserID="XdsTester" UserIsRequestor="true">
>> <RoleIDCode code="110151" codeSystemName="DCM"
>> displayName="Application Launcher"/>
>> </ActiveParticipant>
>> <AuditSourceIdentification AuditSourceID="192.168.1.100"/>
>> </AuditMessage>
>>
>> ERROR: 'XML document structures must start and end within the same
>> entity.'
>> ERROR:
>> 'com.sun.org.apache.xml.internal.utils.WrappedRuntimeExcepti on: XML
>> document structures must start and end within the same entity.'
>>
>> -----------------------------
>>
>> Let me know if you want me to turn on logging for something else as
>> well. The last 'ERRORS' are from my XSLT transformations.
>>
>> regards,
>> Sumedh
>>
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Re: Document instance returned from retrieveDocumentSet() has incomplete data [message #583977 is a reply to message #39248] |
Thu, 27 December 2007 15:14 ![Go to previous message Go to previous message](theme/Solstice/images/up.png) |
Matthew Davis![Friend of Eclipse Friend](/donate/web-api/friends_decorator.php?email=mattadav%40us.ibm.com) Messages: 269 Registered: July 2009 |
Senior Member |
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Hi Sudemh,
Interesting... I was able to retrieve the full document with no
problems. Is there an error being thrown in the retrieve, such as a
timeout, or something?
Thanks,
-Matt
Sumedh wrote:
> Hi folks!
>
> I'm having an issue fetching a CDAR2 document from the public NIST
> repository. I'm calling the retrieveDocumentSet() XDS.b transaction on
> the B_Consumer class. In the list of documents returned, The
> Document.getDocumentData() byte array does not return me the entire
> content even with the latest IHE components. This is causing my XSL
> transformations to fail as the XML is malformed.
>
> The uniqueId of the document is
> "1.2.3.4.100000022002209036.1196211173506.1" and the repository unique
> ID is "1.19.6.24.109.42.1"
> (http://129.6.24.109:9080/axis2/services/xdsrepositoryb).
>
> Anyone experiencing a similar issue? Any help would be appreciated.
>
> Thanks guys.
>
> regards,
> Sumedh
>
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Re: Document instance returned from retrieveDocumentSet() has incomplete data [message #583999 is a reply to message #39310] |
Thu, 27 December 2007 21:57 ![Go to previous message Go to previous message](theme/Solstice/images/up.png) |
Matthew Davis![Friend of Eclipse Friend](/donate/web-api/friends_decorator.php?email=mattadav%40us.ibm.com) Messages: 269 Registered: July 2009 |
Senior Member |
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Hmmm, weird. Ok, here's a couple thoughts/ideas:
1) We haven't tested OHF with Java 6 at all - it is "unsupported".
However, I can't imagine what you're describing being caused by Java 6
(we've seen other errors, but not incomplete buffers). If you have a
Java 5 JRE sitting around, if you could try it there and see what
happens, that may fix it immediately and we'll have to look at Java 6
support shortly.
2) Could you look at the length of the byte array and let us know how
much is being received. The length I'm seeing is 9570 (trying to
determine if there is some buffering issue, showing a cutoff at 1024
bytes or something).
Thanks,
-Matt
Sumedh wrote:
> Hey Matt,
>
> Nope, no exceptions/errors whatsoever in the Console. The status comes
> back as a 'Success'. Even the public ATNA syslogs look good. The byte
> array is just not complete for that document.
>
> If its of any help, my document consumer is on a Windows XP box with
> Java 1.6.0_03 and using the IHE components as of Dec 19th.
>
> Any ideas?
>
> Thanks,
> Sumedh
>
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Re: Document instance returned from retrieveDocumentSet() has incomplete data [message #584042 is a reply to message #39402] |
Sat, 29 December 2007 18:27 ![Go to previous message Go to previous message](theme/Solstice/images/up.png) |
Matthew Davis![Friend of Eclipse Friend](/donate/web-api/friends_decorator.php?email=mattadav%40us.ibm.com) Messages: 269 Registered: July 2009 |
Senior Member |
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Thanks for the update... please add it as a bug for XDS Consumer. I
can't guarantee we'll get it working immediately, unless it's a critical
issue for you.
Thanks,
-Matt
Sumedh wrote:
> hmm...So this goes away if I switch to JDK 5 and add Stax 1.2 as a
> dependency.
> This looks to be a bug for JDK 6 though, not sure who I should log it
> for though :/
>
> Thanks for all the help Matt.
>
> regards,
> Sumedh
>
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Re: Document instance returned from retrieveDocumentSet() has incomplete data [message #584100 is a reply to message #39558] |
Thu, 03 January 2008 19:11 ![Go to previous message Go to previous message](theme/Solstice/images/up.png) |
Matthew Davis![Friend of Eclipse Friend](/donate/web-api/friends_decorator.php?email=mattadav%40us.ibm.com) Messages: 269 Registered: July 2009 |
Senior Member |
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Sumedh,
I ran the XDS.b Retrieve Document Set tests on the same ID in Java 6
(1.6.0_03) and received the full document back - on both the MTOM and
the MTOM+XOP repository endpoints. If possible, could you please post a
full OHF log of the transaction so I can try and find out where the
problem is happening.
Thanks,
-Matt
Sumedh wrote:
> There's another one that I've found but I'll open another thread for it.
> Not sure if its something just on Java 6 though (shouldn't be).
>
> regards,
> Sumedh
>
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Re: Document instance returned from retrieveDocumentSet() has incomplete data [message #584197 is a reply to message #39711] |
Fri, 04 January 2008 17:31 ![Go to previous message Go to previous message](theme/Solstice/images/up.png) |
Matthew Davis![Friend of Eclipse Friend](/donate/web-api/friends_decorator.php?email=mattadav%40us.ibm.com) Messages: 269 Registered: July 2009 |
Senior Member |
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OK, thanks for the log. The "SOAP RESPONSE BODY" being printed out
shows a complete document being there at that phase - aka the document
is being received in full and relayed by Axis to OHF - so the problem is
probably in the deserialization. I'm going to try a couple more things
this morning and get back to you.
In the meantime, could you please try the same transaction on the
following repository endpoint:
http://129.6.24.109:9080/axis2/services/xdsrepositorybopt
I don't think it'll make any difference, but it wouldn't hurt to try.
Thanks a bunch,
-Matt
Sumedh wrote:
> Here you go:
>
> DEBUG - Begin Document Retrieve.
> WARN - Defaulting to IP Address for AuditSourceID. This should be set
> by calling setAuditSourceId.
> DEBUG - Starting Audit start messages [1]
> DEBUG - Sending ActorStartStopMessage Audit message.
> INFO - <13>Jan 4 02:25:03 machine1 <?xml version="1.0"
> encoding="ASCII"?><AuditMessage
> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
> xsi:noNamespaceSchemaLocation="healthcare-security-audit.xsd ">
> <EventIdentification EventActionCode="E"
> EventDateTime="2008-01-04T02:25:03.312-05:00" EventOutcomeIndicator="0">
> <EventID code="110100" codeSystemName="DCM" displayName="Application
> Activity"/>
> <EventTypeCode code="110120" codeSystemName="DCM"
> displayName="Application Start"/>
> </EventIdentification>
> <ActiveParticipant UserID="OHF_XDS_B_CONSUMER" UserIsRequestor="false">
> <RoleIDCode code="110150" codeSystemName="DCM" displayName="Application"/>
> </ActiveParticipant>
> <ActiveParticipant UserID="XdsTester" UserIsRequestor="true">
> <RoleIDCode code="110151" codeSystemName="DCM" displayName="Application
> Launcher"/>
> </ActiveParticipant>
> <AuditSourceIdentification AuditSourceID="192.168.1.100"/>
> </AuditMessage>
>
> DEBUG - sending 1 document requests to:
> http://129.6.24.109:9080/axis2/services/xdsrepositoryb
> log4j:WARN No appenders could be found for logger
> (org.apache.axis2.util.Loader).
> log4j:WARN Please initialize the log4j system properly.
> DEBUG - Beginning XDS SOAP Send
> DEBUG - ****** SOAP REQUEST BODY ******
> DEBUG - <retrieve:RetrieveDocumentSetRequest
> xmlns:retrieve="urn:ihe:iti:xds-b:2007"><retrieve:DocumentRequest ><retrieve:RepositoryUniqueId>1.19.6.24.109.42.1</retrieve:RepositoryUniqueId ><retrieve:DocumentUniqueId>1.2.3.4.100000022002209036.1196211173506.1 </retrieve:DocumentUniqueId></retrieve:DocumentRequest></retrieve:RetrieveDocumentSetRequest >
>
> DEBUG - ********************************
> DEBUG - SOAP Envelope Set
> DEBUG - Initializing ATNA ConfigurationManager
> DEBUG - Received SOAP Response
> DEBUG - ****** SOAP RESPONSE BODY ******
> DEBUG - <xdsb:RetrieveDocumentSetResponse
> xmlns:xdsb="urn:ihe:iti:xds-b:2007"><rs:RegistryResponse
> xmlns:rs="urn:oasis:names:tc:ebxml-regrep:xsd:rs:3.0"
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uaWNhbERvY3VtZW50Pg0K</xdsb:Document><xdsb:RepositoryUniqueId >1.19.6.24.109.42.1</xdsb:RepositoryUniqueId><xdsb:DocumentUniqueId >1.2.3.4.100000022002209036.1196211173506.1</xdsb:DocumentUniqueId ><xdsb:mimeType>text/xml</xdsb:mimeType></xdsb:DocumentResponse ></xdsb:RetrieveDocumentSetResponse>
>
> DEBUG - ********************************
> DEBUG - Beginning XDS.b MTOM attachment extraction
> DEBUG - Extracted attachment with id
> 1.2.3.4.100000022002209036.1196211173506.1 from repository
> 1.19.6.24.109.42.1
> DEBUG - Ending XDS.b MTOM attachment extraction
> DEBUG - Ending XDS SOAP Processing
> DEBUG - Loading response in EMF.
> DEBUG - Success.
> DEBUG - RegistryResponse error list is null.
> WARN - Defaulting to IP Address for AuditSourceID. This should be set
> by calling setAuditSourceId.
> DEBUG - Sending PHIImportEvent Audit message.
> INFO - <13>Jan 4 02:25:06 machine1 <?xml version="1.0"
> encoding="ASCII"?><AuditMessage
> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
> xsi:noNamespaceSchemaLocation="healthcare-security-audit.xsd ">
> <EventIdentification EventActionCode="R"
> EventDateTime="2008-01-04T02:25:06.468-05:00" EventOutcomeIndicator="0">
> <EventTypeCode code="ITI-43" codeSystemName="IHE Transactions"
> displayName="Retrieve Document Set"/>
> <EventID code="110107" codeSystemName="DCM" displayName="Import"/>
> </EventIdentification>
> <ActiveParticipant
> UserID="http://129.6.24.109:9080/axis2/services/xdsrepositoryb"
> UserIsRequestor="false">
> <RoleIDCode code="110152" codeSystemName="DCM" displayName="Destination"/>
> </ActiveParticipant>
> <ActiveParticipant UserID="XdsTester" UserIsRequestor="true">
> <RoleIDCode code="110153" codeSystemName="DCM" displayName="Source"/>
> </ActiveParticipant>
> <AuditSourceIdentification AuditSourceID="192.168.1.100"/>
> <ParticipantObjectIdentification
> ParticipantObjectID=" 270a59d7a8b145b^^^&1.3.6.1.4.1.21367.2005.3.7&am p;ISO "
> ParticipantObjectTypeCode="1" ParticipantObjectTypeCodeRole="1">
> <ParticipantObjectIDTypeCode code="2"/>
> </ParticipantObjectIdentification>
> <ParticipantObjectIdentification
> ParticipantObjectID="1.2.3.4.100000022002209036.1196211173506.1 "
> ParticipantObjectTypeCode="2" ParticipantObjectTypeCodeRole="3">
> <ParticipantObjectIDTypeCode code="9"/>
> </ParticipantObjectIdentification>
> </AuditMessage>
>
> DEBUG - Now have recieved 1 documents.
> WARN - Defaulting to IP Address for AuditSourceID. This should be set
> by calling setAuditSourceId.
> DEBUG - Starting Audit stop messages [1]
> DEBUG - Sending ActorStartStopMessage Audit message.
> INFO - <13>Jan 4 02:25:06 machine1 <?xml version="1.0"
> encoding="ASCII"?><AuditMessage
> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
> xsi:noNamespaceSchemaLocation="healthcare-security-audit.xsd ">
> <EventIdentification EventActionCode="E"
> EventDateTime="2008-01-04T02:25:06.500-05:00" EventOutcomeIndicator="0">
> <EventID code="110100" codeSystemName="DCM" displayName="Application
> Activity"/>
> <EventTypeCode code="110121" codeSystemName="DCM"
> displayName="Application Stop"/>
> </EventIdentification>
> <ActiveParticipant UserID="OHF_XDS_B_CONSUMER" UserIsRequestor="false">
> <RoleIDCode code="110150" codeSystemName="DCM" displayName="Application"/>
> </ActiveParticipant>
> <ActiveParticipant UserID="XdsTester" UserIsRequestor="true">
> <RoleIDCode code="110151" codeSystemName="DCM" displayName="Application
> Launcher"/>
> </ActiveParticipant>
> <AuditSourceIdentification AuditSourceID="192.168.1.100"/>
> </AuditMessage>
>
> ERROR: 'XML document structures must start and end within the same
> entity.'
> ERROR: 'com.sun.org.apache.xml.internal.utils.WrappedRuntimeExcepti on:
> XML document structures must start and end within the same entity.'
>
> -----------------------------
>
> Let me know if you want me to turn on logging for something else as
> well. The last 'ERRORS' are from my XSLT transformations.
>
> regards,
> Sumedh
>
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Re: Document instance returned from retrieveDocumentSet() has incomplete data [message #584286 is a reply to message #39802] |
Tue, 08 January 2008 20:10 ![Go to previous message Go to previous message](theme/Solstice/images/up.png) |
Matthew Davis![Friend of Eclipse Friend](/donate/web-api/friends_decorator.php?email=mattadav%40us.ibm.com) Messages: 269 Registered: July 2009 |
Senior Member |
|
|
Hi Sumedh,
I am running a new OHF build right now (will be out shortly) that adds
additional debug info into the document buffering in
retrieveDocumentSet. Hopefully this will allow us to pinpoint where the
data loss is happening. I have yet to reproduce the problem in Java 6,
so I'm still guessing here and hoping for the best.
There will be two spots where the document size is printed. Once is
immediately after the document extraction in B_XDSSoapClient, with a
line looking like this:
[DEBUG][B_XDSSoapClient.java:174] Extracted attachment with id
1.2.3.4.100000022002209036.1196211173506.1 from repository
1.19.6.24.109.42.1 with size 9570.
The other is at the end of processing, after all document retrieves have
been buffered. This is after OHF is finished touching the documents and
no other changes happen before the return to the caller. It will look
something like this:
[DEBUG][B_Consumer.java:502] Received 1 documents in total
[DEBUG][B_Consumer.java:507] - Document #1
[ID=1.2.3.4.100000022002209036.1196211173506.1, REP=1.19.6.24.109.42.1,
SIZE=9570]
Please try running this again and post the results of your log. If the
value is incorrect on the first log message, I will know where to begin
to look. If it's different between the first and second log message,
I'll be a little more puzzled but will also have other places to look.
Thank you,
-Matt
Matthew Davis wrote:
> OK, thanks for the log. The "SOAP RESPONSE BODY" being printed out
> shows a complete document being there at that phase - aka the document
> is being received in full and relayed by Axis to OHF - so the problem is
> probably in the deserialization. I'm going to try a couple more things
> this morning and get back to you.
>
> In the meantime, could you please try the same transaction on the
> following repository endpoint:
> http://129.6.24.109:9080/axis2/services/xdsrepositorybopt
> I don't think it'll make any difference, but it wouldn't hurt to try.
>
> Thanks a bunch,
> -Matt
>
>
> Sumedh wrote:
>> Here you go:
>>
>> DEBUG - Begin Document Retrieve.
>> WARN - Defaulting to IP Address for AuditSourceID. This should be set
>> by calling setAuditSourceId.
>> DEBUG - Starting Audit start messages [1]
>> DEBUG - Sending ActorStartStopMessage Audit message.
>> INFO - <13>Jan 4 02:25:03 machine1 <?xml version="1.0"
>> encoding="ASCII"?><AuditMessage
>> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
>> xsi:noNamespaceSchemaLocation="healthcare-security-audit.xsd ">
>> <EventIdentification EventActionCode="E"
>> EventDateTime="2008-01-04T02:25:03.312-05:00" EventOutcomeIndicator="0">
>> <EventID code="110100" codeSystemName="DCM" displayName="Application
>> Activity"/>
>> <EventTypeCode code="110120" codeSystemName="DCM"
>> displayName="Application Start"/>
>> </EventIdentification>
>> <ActiveParticipant UserID="OHF_XDS_B_CONSUMER" UserIsRequestor="false">
>> <RoleIDCode code="110150" codeSystemName="DCM"
>> displayName="Application"/>
>> </ActiveParticipant>
>> <ActiveParticipant UserID="XdsTester" UserIsRequestor="true">
>> <RoleIDCode code="110151" codeSystemName="DCM"
>> displayName="Application Launcher"/>
>> </ActiveParticipant>
>> <AuditSourceIdentification AuditSourceID="192.168.1.100"/>
>> </AuditMessage>
>>
>> DEBUG - sending 1 document requests to:
>> http://129.6.24.109:9080/axis2/services/xdsrepositoryb
>> log4j:WARN No appenders could be found for logger
>> (org.apache.axis2.util.Loader).
>> log4j:WARN Please initialize the log4j system properly.
>> DEBUG - Beginning XDS SOAP Send
>> DEBUG - ****** SOAP REQUEST BODY ******
>> DEBUG - <retrieve:RetrieveDocumentSetRequest
>> xmlns:retrieve="urn:ihe:iti:xds-b:2007"><retrieve:DocumentRequest ><retrieve:RepositoryUniqueId>1.19.6.24.109.42.1</retrieve:RepositoryUniqueId ><retrieve:DocumentUniqueId>1.2.3.4.100000022002209036.1196211173506.1 </retrieve:DocumentUniqueId></retrieve:DocumentRequest></retrieve:RetrieveDocumentSetRequest >
>>
>> DEBUG - ********************************
>> DEBUG - SOAP Envelope Set
>> DEBUG - Initializing ATNA ConfigurationManager
>> DEBUG - Received SOAP Response
>> DEBUG - ****** SOAP RESPONSE BODY ******
>> DEBUG - <xdsb:RetrieveDocumentSetResponse
>> xmlns:xdsb="urn:ihe:iti:xds-b:2007"><rs:RegistryResponse
>> xmlns:rs="urn:oasis:names:tc:ebxml-regrep:xsd:rs:3.0"
>> status="urn:oasis:names:tc:ebxml-regrep:ResponseStatusType:Success "></rs:RegistryResponse><xdsb:DocumentResponse><xdsb:Document > PCEtLSANCi8qKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioq KioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqDQog KiBDb3B5cmlnaHQgKGMpIDIwMDYgSUJNIENvcnBvcmF0aW9uIGFuZCBvdGhl cnMuDQogKiBBbGwgcmlnaHRzIHJlc2VydmVkLiBUaGlzIHByb2dyYW0gYW5k IHRoZSBhY2NvbXBhbnlpbmcgbWF0ZXJpYWxzDQogKiBhcmUgbWFkZSBhdmFp bGFibGUgdW5kZXIgdGhlIHRlcm1zIG9mIHRoZSBFY2xpcHNlIFB1YmxpYyBM aWNlbnNlIHYxLjANCiAqIHdoaWNoIGFjY29tcGFuaWVzIHRoaXMgZGlzdHJp YnV0aW9uLCBhbmQgaXMgYXZhaWxhYmxlIGF0DQogKiBodHRwOi8vd3d3LmVj bGlwc2Uub3JnL2xlZ2FsL2VwbC12MTAuaHRtbA0KICoNCiAqIENvbnRyaWJ1 dG9yczoNCiAqICAgICBJQk0gQ29ycG9yYXRpb24gLSBpbml0aWFsIEFQSSBh bmQgaW1wbGVtZW50YXRpb24NCiAqKioqKioqKioqKioqKioqKioqKioqKioq KioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioqKioq KioqKioqKioqLw0KIC0tPg0KIDxDbGluaWNhbERvY3VtZW50IHhtbG5zPSJ1 cm46aGw3LW9yZzp2MyIgIHhtbG5zOnhzaT0iaHR0cDovL3d3dy53My5vcmcv MjAwMS9YTUxTY2hlbW
E
>>
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Npd
>
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ICA
>
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Npa
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bGl
>
> uaWNhbERvY3VtZW50Pg0K</xdsb:Document><xdsb:RepositoryUniqueId >1.19.6.24.109.42.1</xdsb:RepositoryUniqueId><xdsb:DocumentUniqueId >1.2.3.4.100000022002209036.1196211173506.1</xdsb:DocumentUniqueId ><xdsb:mimeType>text/xml</xdsb:mimeType></xdsb:DocumentResponse ></xdsb:RetrieveDocumentSetResponse>
>
>>
>> DEBUG - ********************************
>> DEBUG - Beginning XDS.b MTOM attachment extraction
>> DEBUG - Extracted attachment with id
>> 1.2.3.4.100000022002209036.1196211173506.1 from repository
>> 1.19.6.24.109.42.1
>> DEBUG - Ending XDS.b MTOM attachment extraction
>> DEBUG - Ending XDS SOAP Processing
>> DEBUG - Loading response in EMF.
>> DEBUG - Success.
>> DEBUG - RegistryResponse error list is null.
>> WARN - Defaulting to IP Address for AuditSourceID. This should be set
>> by calling setAuditSourceId.
>> DEBUG - Sending PHIImportEvent Audit message.
>> INFO - <13>Jan 4 02:25:06 machine1 <?xml version="1.0"
>> encoding="ASCII"?><AuditMessage
>> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
>> xsi:noNamespaceSchemaLocation="healthcare-security-audit.xsd ">
>> <EventIdentification EventActionCode="R"
>> EventDateTime="2008-01-04T02:25:06.468-05:00" EventOutcomeIndicator="0">
>> <EventTypeCode code="ITI-43" codeSystemName="IHE Transactions"
>> displayName="Retrieve Document Set"/>
>> <EventID code="110107" codeSystemName="DCM" displayName="Import"/>
>> </EventIdentification>
>> <ActiveParticipant
>> UserID="http://129.6.24.109:9080/axis2/services/xdsrepositoryb"
>> UserIsRequestor="false">
>> <RoleIDCode code="110152" codeSystemName="DCM"
>> displayName="Destination"/>
>> </ActiveParticipant>
>> <ActiveParticipant UserID="XdsTester" UserIsRequestor="true">
>> <RoleIDCode code="110153" codeSystemName="DCM" displayName="Source"/>
>> </ActiveParticipant>
>> <AuditSourceIdentification AuditSourceID="192.168.1.100"/>
>> <ParticipantObjectIdentification
>> ParticipantObjectID=" 270a59d7a8b145b^^^&1.3.6.1.4.1.21367.2005.3.7&am p;ISO "
>> ParticipantObjectTypeCode="1" ParticipantObjectTypeCodeRole="1">
>> <ParticipantObjectIDTypeCode code="2"/>
>> </ParticipantObjectIdentification>
>> <ParticipantObjectIdentification
>> ParticipantObjectID="1.2.3.4.100000022002209036.1196211173506.1 "
>> ParticipantObjectTypeCode="2" ParticipantObjectTypeCodeRole="3">
>> <ParticipantObjectIDTypeCode code="9"/>
>> </ParticipantObjectIdentification>
>> </AuditMessage>
>>
>> DEBUG - Now have recieved 1 documents.
>> WARN - Defaulting to IP Address for AuditSourceID. This should be set
>> by calling setAuditSourceId.
>> DEBUG - Starting Audit stop messages [1]
>> DEBUG - Sending ActorStartStopMessage Audit message.
>> INFO - <13>Jan 4 02:25:06 machine1 <?xml version="1.0"
>> encoding="ASCII"?><AuditMessage
>> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
>> xsi:noNamespaceSchemaLocation="healthcare-security-audit.xsd ">
>> <EventIdentification EventActionCode="E"
>> EventDateTime="2008-01-04T02:25:06.500-05:00" EventOutcomeIndicator="0">
>> <EventID code="110100" codeSystemName="DCM" displayName="Application
>> Activity"/>
>> <EventTypeCode code="110121" codeSystemName="DCM"
>> displayName="Application Stop"/>
>> </EventIdentification>
>> <ActiveParticipant UserID="OHF_XDS_B_CONSUMER" UserIsRequestor="false">
>> <RoleIDCode code="110150" codeSystemName="DCM"
>> displayName="Application"/>
>> </ActiveParticipant>
>> <ActiveParticipant UserID="XdsTester" UserIsRequestor="true">
>> <RoleIDCode code="110151" codeSystemName="DCM"
>> displayName="Application Launcher"/>
>> </ActiveParticipant>
>> <AuditSourceIdentification AuditSourceID="192.168.1.100"/>
>> </AuditMessage>
>>
>> ERROR: 'XML document structures must start and end within the same
>> entity.'
>> ERROR:
>> 'com.sun.org.apache.xml.internal.utils.WrappedRuntimeExcepti on: XML
>> document structures must start and end within the same entity.'
>>
>> -----------------------------
>>
>> Let me know if you want me to turn on logging for something else as
>> well. The last 'ERRORS' are from my XSLT transformations.
>>
>> regards,
>> Sumedh
>>
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